Gene Details:

  • Gene ID: ORGLA03G0402000.1
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Oryza glaberrima
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_025880492.1  — putative B3 domain-containing protein Os04g0676650
  • Swissprot:  Q7XKC4  — Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
  • TrEMBL:  I1PI24  — I1PI24_ORYGL; Uncharacterized protein
  • STRING:  ORGLA03G0402000.1  — (Oryza glaberrima)

Gene Ontology:

  • GO:0010262  — Biological Process — somatic embryogenesis
  • GO:0010344  — Biological Process — seed oilbody biogenesis
  • GO:0010431  — Biological Process — seed maturation
  • GO:0010601  — Biological Process — positive regulation of auxin biosynthetic process
  • GO:0045893  — Biological Process — positive regulation of transcription, DNA-templated
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >ORGLA03G0402000.1|Oryza_glaberrima|B3|ORGLA03G0402000.1
    ATGGCTGATGCTAGGGGCTCCTCTTCTTCTTCCGGCGATGGCGGTGGCGGCGAGGGCAAGGGCGGAGCAGGCCATGGTGACTTTGTGGGGGGCGGCCAGCACAACTGGTACCATGGGATCCTTGGGGCCGTGCCGCCGCCCAACGTTGGGCGACAAAACATCGTGCACCATCAGTACCCTGCTGCTAGCTTGATCCAGCAGCACCACCAGTCGCCAACAATGCCGCTACCGATGGCGCAGCTCCCCTACGTGCCCCAATACACCGTGCTGCCTACGCCCGCCGTGCTCCCGTCGCACCACCACCACCACGGCCAGTCGCAGATATCTCAAGAAAACTTCCAAGACTGGGTTCCCTCCAACAATGTTGCAGCTCCGCATGTTCCCAGCGCTTTTCAGGATTGGAGGCAAATGTGCAATGGGTCGGCATTCATGCCTTTTGGCCAAACTGCTGCCAATAGCAATGGATTTTACCAGAATCTGACCTTCAATTCATGGACTAGCAATAACATGCCGAGGAACCCTGTCTACACTAGTTTCCACCCTGCTGCAATTGAGGATCACCATGCTCCTCTATTCCATAGCAACAATCATGACATAGACCCAGAGTTTTTGGGAAACCGACACTTGCATGGAGTTGACATCGCCGGAGCTCCACCCGCAAAAGCCACCTCACCTGCCACCGCCGGAGGTCTGCTCACGAACACAGCCCCTGCCACCATGTCACAGATCCATGCGAGATGCCGCCGTCGCCAAATCTACCGCTGCTGTGGCCTTCTTCCGCGAGCACCTCCACCATCAGATCCGTGCGCGTTCGCGAGGGCCGCCATCACCGCTGCCGGATCCGCCCGCGGCCTCCTCTCTCATTTGTACGGTGGCTTGGTGTTTTGGCTTGTTGGGAAAAGGAAGCTGGGGGAGAAACGAGAGAGGAAGAGAAAAGTGGTGGCTGGGATGGATCCACCAATTGTCTTCAGAAGGAGCGATATGGAGAGCGAAAAAAACGATGATAATCCAGATCAAATTCCGGTTAGTGAGCCTCCAAGCATGAATCAGAACGGTGAAAATCTTATTATTAGATTCAACTGTAGAGAATACCGTGTTATCTTGCGCAAGGAGTTAACAAACAGTGATGTTGGTAATATTGGAAGAATCGTGATGCCAAAGAGGGATGCAGAGGCTCATCTTCCAGCATTGCATCAAAGGGAAGGTGTGACGCTGAAAATGGATGACTTCAAGTTTGAAACTACATGGAATTTTAAGTATAGGTTCTGGCCCAACAACAAGAGCAGAATGTATGTCTTGGAAAGCACCGGTGGTTTTGTGAAGCATCACGGTCTCCAGACAGGCGACATATTCATCATTTACAAAAGCTCGGAGTCTGGGAAATTTTATGTTGCCTTATGCCTCTTTTGA
Protein Sequence:
  • >ORGLA03G0402000.1|Oryza_glaberrima|B3|ORGLA03G0402000.1
    MADARGSSSSSGDGGGGEGKGGAGHGDFVGGGQHNWYHGILGAVPPPNVGRQNIVHHQYPAASLIQQHHQSPTMPLPMAQLPYVPQYTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAFQDWRQMCNGSAFMPFGQTAANSNGFYQNLTFNSWTSNNMPRNPVYTSFHPAAIEDHHAPLFHSNNHDIDPEFLGNRHLHGVDIAGAPPAKATSPATAGGLLTNTAPATMSQIHARCRRRQIYRCCGLLPRAPPPSDPCAFARAAITAAGSARGLLSHLYGGLVFWLVGKRKLGEKRERKRKVVAGMDPPIVFRRSDMESEKNDDNPDQIPVSEPPSMNQNGENLIIRFNCREYRVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRFWPNNKSRMYVLESTGGFVKHHGLQTGDIFIIYKSSESGKFYVALCLF