Information report for NNU_011813-RA
Gene Details
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Functional Annotation
- Refseq: XP_010263798.1 — PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
- TrEMBL: A0A1U8AE36 — A0A1U8AE36_NELNU; B3 domain-containing transcription factor VRN1-like isoform X1
- STRING: XP_010263798.1 — (Nelumbo nucifera)
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010048 — Biological Process — vernalization response
- GO:0005654 — Cellular Component — nucleoplasm
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g041048m
- Juglans regia: WALNUT_00005007-RA
- Populus trichocarpa: Potri.004G147000.1, Potri.004G147000.2
- Prunus avium: Pav_sc0001217.1_g140.1.mk
- Prunus mume: XP_016650771.1, XP_008236690.1, XP_008236688.1, XP_008236689.1
- Prunus persica: Prupe.8G113000.2.p, PRUPE_8G113000, Prupe.8G113000.1.p, Prupe.8G113000.5.p
- Pyrus bretschneideri: Pbr034625.1
- Vitis vinifera: GSVIVT01031852001
Sequences
CDS Sequence:
- >NNU_011813-RA|Nelumbo_nucifera|B3|NNU_011813-RA
ATGGTGGAAATGCCCCCAGTGACTAAAAAGCTGCGACAGCCTAGACCAATTGCTGAAACAAAAATACGTAGAATGACAAGCCATCGACGGAACAGACCTTCCTTCTTCAAAGTTTTGATCGCCCCCAACTTCTCCAGACTGCTGAGGATACCGCCACCTTTCATGAAGCATTTCAGTGGATCAGTGCCCAAAACATTCATCCTCAGAAGTCCAACCGGAAAACTTTGGTCTGTAAGGGTGAAAAGGATTGAAAAACAATTCTACTTTGAAAAGGGTTGGCAGAGATTTGTGAAACATCATCGATTGGTGGCAGGGGACCTCTTAGTTTTCAGCTATCATGGTGATTCCAGATTCACTGTTAAAATATACGACACGAGCTCTTGCGAAAAGGAATTGCCTTTTCTGCTTTCTTCATCATCAGCTCAGACAACCACTTCCACTCAGAGTGGTCAGAGTAATCTCCGGCCAAAGAACAAAAAGCAAGGCAAAACAAAGACCGAATCCACCACCAAAGCAATTGTTTCTACTAGTAAAGGTAATGGTGATGAGTTTTTCTTCAGCACAATACTCACAGTCGTTATCCATGCAACGCTTCTCATATTCATGATATATATGGACGCAGTTGGCCGTGCTACACCAAGGAGGCAACCAAGAAACGAGGCGATTAAAGCAGCCTCTTCGTACAAAACAGAATTCCCACAGTTTGCATCACTGTGTGGCAAGACTAGCAGAAGTCACATGATGATTCCAAAGGCGGTGACGAAAGAGGTAGGGCTGACAAGCGAGGGGAAAGCCATGCTTTGGGATCCTCGGGGGAGGTCGTGGAGCGTCAGAGTTCATCCAAGGAGCGATGGCCGAGCTGATATTTCAGGCGGGTGGCCTGCCTTTCGGAAAGCCAACAACATAGTACAAGGTGATGCCTGCAATTTTGAGTTCATCCGAGGGCCTGGGGTCGTAATCTGTGTCAACATTTTCCGGGAGGCTGCAGGATTTGGAGAACTCGCACACTTTTCTAACCAGATACCACGCGCACCTCCACCTTCTACGGCCACAGTGCTGAAAGCGTTGCCATGTATCACAGAAGAGGACGTATCTGAAACAGATGCTGGCGGTTGGTCGTCGTATACGTTGGCAGAAACAATGAACCGTCGCCGTAGTTGCCAAGATAGCTCCGATGTTTCATCAATCTCCTGGGTAAAGAGTTTTCATTTCTTCAAGATAATCCATTCCTCCATTCTTCAACAACGACAACTTGTGATCCCAGAAAAGTTTGTGAGGAAATTGAGGGGAAATCTCTCTACTGTTGCAGTCCTTACCGTTCCCAGTGGTAAAGTATGGAGAATAGGGTTGAAGAAGGTGAATGGAAAACTATGGTTCCAGAAGGGTTGGCAAGAGTTCGTAGAGTATCATTCTTTAGGCGAAGGGCACGTCTTGGTTTTTAGATATGAAGGGAATTCACATTTTCATGTCCTTATATTTGATACCACAGCCTCTGAGATAGAGTATCCATGTGATCATACTGAGAATCATTTAGAAACCAGCCTGATACCATGCAAGGTAAAGGAAGAAATATTGCAAGAGGATTCTCTGGAAATCTTGGATGTTTTTCCACCTTCCCTGGGAAACCCTGCTTCTCTAGCTACTCCAAGCAGTAAGGGTGTCATTAAGGAACGACTAGAAGATCAATGCACGACTAGAGGAAGAAGAGAAAATCACCCAAGATGGTCAAGGAAAAGTGAGCCGAGTTGTGGAACAAAGAACCATGGCAATGGCAATCCACATCCACAAGCATCGAGTACTCCTTCTGTTGGGCATAAAGGGATGCATGGTTTTGCAGAGACGGAAAAAAAGAGTGCAATCACAAGTGGAACCAAAAGGCGCCCTGATTCTAGGGCTTTTGCAACGAGGGGTTTGACAATCCAAGAAAGAAGTAGAGTTGGTAAAGCTGCAAGAGCATTTAAGTCCAAGAATCCTTTCGTCTCGGTTATTATGCGTCCATCATATGTTGGTGGAGGAGGAAGAGGATGCAGTCTGGATCTACCAATGGAGTTCTGTAGGATATATTTGACAGAGGAGATGCAGAGGAACATCAAAATGGAGGATTCTGACGGGAGATCGTGGTCCGCCCGGCTTTTCTTTGAAGGAAATGGTGCAGTGAGGATATGCAAAGGAGAGGTGCCACATGTCAATACTGTTGGAGTCTTTAATGCCCTTAGGAAGAACAAGAAGGGCAGTTCTTTTGGGGTTGTCGACGATGAGCCTAGGTTGGCTGAGCAAGTAGCTGTAGAGGTCATCCACATCGACATTGACAATGTCAAAGAAAGGTTGAAGGATGTGCCCAGGAGGGGGAACACAGAGTCCGTCAATTCGGAGGTCCACCTTGCCGAGCAAGTCCCTATAGCCCCCAGTACAGAGATGGATGACACATCAGGCCCCTTCATTGGTGTGGGAGAGTAG
Protein Sequence:
- >NNU_011813-RA|Nelumbo_nucifera|B3|NNU_011813-RA
MVEMPPVTKKLRQPRPIAETKIRRMTSHRRNRPSFFKVLIAPNFSRLLRIPPPFMKHFSGSVPKTFILRSPTGKLWSVRVKRIEKQFYFEKGWQRFVKHHRLVAGDLLVFSYHGDSRFTVKIYDTSSCEKELPFLLSSSSAQTTTSTQSGQSNLRPKNKKQGKTKTESTTKAIVSTSKGNGDEFFFSTILTVVIHATLLIFMIYMDAVGRATPRRQPRNEAIKAASSYKTEFPQFASLCGKTSRSHMMIPKAVTKEVGLTSEGKAMLWDPRGRSWSVRVHPRSDGRADISGGWPAFRKANNIVQGDACNFEFIRGPGVVICVNIFREAAGFGELAHFSNQIPRAPPPSTATVLKALPCITEEDVSETDAGGWSSYTLAETMNRRRSCQDSSDVSSISWVKSFHFFKIIHSSILQQRQLVIPEKFVRKLRGNLSTVAVLTVPSGKVWRIGLKKVNGKLWFQKGWQEFVEYHSLGEGHVLVFRYEGNSHFHVLIFDTTASEIEYPCDHTENHLETSLIPCKVKEEILQEDSLEILDVFPPSLGNPASLATPSSKGVIKERLEDQCTTRGRRENHPRWSRKSEPSCGTKNHGNGNPHPQASSTPSVGHKGMHGFAETEKKSAITSGTKRRPDSRAFATRGLTIQERSRVGKAARAFKSKNPFVSVIMRPSYVGGGGRGCSLDLPMEFCRIYLTEEMQRNIKMEDSDGRSWSARLFFEGNGAVRICKGEVPHVNTVGVFNALRKNKKGSSFGVVDDEPRLAEQVAVEVIHIDIDNVKERLKDVPRRGNTESVNSEVHLAEQVPIAPSTEMDDTSGPFIGVGE