Information report for NNU_001995-RA
Gene Details
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Functional Annotation
- Refseq: XP_010269230.1 — PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
- TrEMBL: A0A1U8AS92 — A0A1U8AS92_NELNU; B3 domain-containing protein Os01g0234100-like isoform X1
- STRING: XP_010269230.1 — (Nelumbo nucifera)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g013945m, orange1.1g012931m, orange1.1g012926m, orange1.1g010160m
- Manihot esculenta: Manes.13G127300.1.p
- Populus trichocarpa: Potri.007G042500.1, Potri.007G042500.2, Potri.005G137600.1, Potri.005G137600.2
- Prunus mume: XP_008236526.1
- Prunus persica: Prupe.8G122800.2.p, Prupe.8G122800.1.p, Prupe.8G122800.3.p
Sequences
CDS Sequence:
- >NNU_001995-RA|Nelumbo_nucifera|B3|NNU_001995-RA
ATGGTGGTGGATCAGAAGGCAAAAGAAGACACTGAACGGGTAAAAGCAGAGGTGAAGGAAGACATGAAAGATAATGAAGACCGGGTCACACTTTCCCGGTTGTTTCAAACTCGGCAAAGCCCCACTCCAAGTCCAAATCCCACCTCCACGGTTAGCCGCAGTAAGCCGAAGGAGACTATTACGAAGTTGTTTCGGAGAAGATGGCATTCCGCTCCCCCACGAATACGTAAGAAGCAGAAAGTGGTTGTCCATCATGCACAGACTTGCAAAAGCTATAAGCAAAAGAGGTCTATCATTGATCGATTATTTGCTTCTGGGAAAGCTAATCCAACATCTGCCATGGAACGAGCGAGAGAAGTTCGGATGAATTTAGAGCCAGAGTTCCCTAGCTTTGTGAAAGTTATGCTTCGCTCACATGTTACTAATGGGTTTTGGCTGGGGCTTCCTGCGAAATTCTGCCTTTCCAACTTACCAAAACAAGATACTACCATAGCTTTGGTGGATGAAAATGGGCAAGAAACTCCAGCAAAATACCTTGCCCAAAGGGTGGGCTTGAGTGGTGGATGGAGAGGCTTCTCCATTGCCCACAAATTAGTCGAGGGAGACGTGTTGATATTTCAATTAGTCACTGTTACTAAATTCAAGGTGTACATAATAAGGGAAAATGATTTGACTGAAGTTGATGGAGCCCTTGGCCTTCTAAATTTGGACGGTCGTGCAAGGAAAATGGATTCTGCAGAAGACGAGGATCCCCCGCCATTTTTACCTGTTCATGCAGAGAAACGTCAAAAGACTAACCACCCAATATCCATATCTCATCTTGGGATGCCAAGTGGAGAGAAGTCTGAAAATGACGGTCAAGAAGTTGGCCCAGAGGTTTTGGAAACAGGAATCAGATTTTCAGGGGCCAATGTTGAATTCAAAGATGTCAACAATTTTGAGGATTTCAACATTGTGGTGAATGATTTAATTATAAACTCGGAGCTCCCTGAACACGTAAGGAAAAATTACTATCAGCTCTGCTGTAGCCAGAAAGCTTTCCTCCATGACAATCTGCTTGAGGGCATCAATTGTTTGCTAAGCAGTGGAGTCATTTCTGAGACTGTCAACATAGCTGACGCCATAAGAGCTTGCAAGCTGACCACGGCATCCAAGGACGACTTAATGAAATGGGACAAGAGCTTACAGGCCTTTGAATATCTTGGAATGAATGTAGGCTTTCTACGTTCTCGGCTGAATTGCCTTGTTGATCTTGCCTTCGGATCAGAGGAGGCTGTGGCTTTAAGGAGGTACAAGGAAGGAATGGTTGCACAATCTCAGTTGGAAGAAAACATAAGAAATCTGGAAGTGAAGCTGGTACAACTTAAAGAGACACATAAGAGATATGAGGACGAGATTAAGAGTCTGAAGGTGCAGACTGAGATGCTTGAGATAAAGTTTCAGGAGAAGGCTAAACCAACAACCTACGAGGATTTGCGTCGACAGAGATTAGAGGAGAACAAGAAGAGGATGGAGGACCTCAACCTTACTCAGCTCGCTCAGACTCTCCGCAATGCCAGCCCCAAACCCTCACCGGTAAAGCAAATGAAGCCACGGACACTTCGCCCGCAAGTAGATTTGGCCGCAGTAAGAAGGTCGACTCGTGTCGCCAATAAGCCCCCTCCCAATTACAAGGAAGTTGAGTTCTTCTTTCACCTCCTATTTTATTTTGTGAATATATCATATACTATTCTGCCATTGGTTACTACCAGAAGCTATAAGAGGAGGGATTTGTCAAATCGCGTGTACGCTTCAGACGAGGCCAGATCTTATGCCATAGAGAGAGCAGAAAAATTACTAGAAAATCTAGAACCCGAATACCCAAGCTTTGTGAAGACAATGCTCCAATCTCATGTGACTGGCGGATTTTGGTTGGGACTTTCTGTCCAGTTCTGCAAGATGAACCTTCCAAAACGTGATGAAACAATTATTTTGGAAGATGAGAATGGAGAAGAGCACCCAACAACATTCCTGGCACAGAAAACAGGACTAAGTGCTGGATGGAGAGGGTTTGCAATTTCACACGAATTGGTTGATGGGGATGCTCTAGTTTTCCAGCTAGTTAAGCGCACAACTTTTAAGGTATATATAATACGGGTGAATGATCATGAAGAAGTTGACAAGACTTCAAGTGTTACAAATGTTGGTGCAAAACGTATCAATGCAGGTAAAAGATAG
Protein Sequence:
- >NNU_001995-RA|Nelumbo_nucifera|B3|NNU_001995-RA
MVVDQKAKEDTERVKAEVKEDMKDNEDRVTLSRLFQTRQSPTPSPNPTSTVSRSKPKETITKLFRRRWHSAPPRIRKKQKVVVHHAQTCKSYKQKRSIIDRLFASGKANPTSAMERAREVRMNLEPEFPSFVKVMLRSHVTNGFWLGLPAKFCLSNLPKQDTTIALVDENGQETPAKYLAQRVGLSGGWRGFSIAHKLVEGDVLIFQLVTVTKFKVYIIRENDLTEVDGALGLLNLDGRARKMDSAEDEDPPPFLPVHAEKRQKTNHPISISHLGMPSGEKSENDGQEVGPEVLETGIRFSGANVEFKDVNNFEDFNIVVNDLIINSELPEHVRKNYYQLCCSQKAFLHDNLLEGINCLLSSGVISETVNIADAIRACKLTTASKDDLMKWDKSLQAFEYLGMNVGFLRSRLNCLVDLAFGSEEAVALRRYKEGMVAQSQLEENIRNLEVKLVQLKETHKRYEDEIKSLKVQTEMLEIKFQEKAKPTTYEDLRRQRLEENKKRMEDLNLTQLAQTLRNASPKPSPVKQMKPRTLRPQVDLAAVRRSTRVANKPPPNYKEVEFFFHLLFYFVNISYTILPLVTTRSYKRRDLSNRVYASDEARSYAIERAEKLLENLEPEYPSFVKTMLQSHVTGGFWLGLSVQFCKMNLPKRDETIILEDENGEEHPTTFLAQKTGLSAGWRGFAISHELVDGDALVFQLVKRTTFKVYIIRVNDHEEVDKTSSVTNVGAKRINAGKR