Gene Details:
- Gene ID: Niben101Scf07554g01010.1
- Gene Family: B3 Family
- Description: B3 Family protein
- Species: Nicotiana benthamiana
- Source: B3 family gene from PlantTFDB
Protein Features:
- PROSITE profile: PS50863
- SMART: SM01019
- SuperFamily: SSF101936
- Pfam: PF02362
- Gene3D: G3DSA:2.40.330.10
- InterPro: IPR003340 IPR015300
Annotation Proteins:
- Refseq: XP_009803160.1 — PREDICTED: B3 domain-containing transcription factor NGA1-like
- TrEMBL: W6HX90 — W6HX90_NICBE; NGATHAb
- STRING: XP_009803160.1 — (Nicotiana sylvestris)
Gene Ontology:
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction:
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature:
Sequences:
CDS Sequence:
- >Niben101Scf07554g01010.1|Nicotiana_benthamiana|B3|Niben101Scf07554g01010.1
Protein Sequence:
- >Niben101Scf07554g01010.1|Nicotiana_benthamiana|B3|Niben101Scf07554g01010.1
MNFFTSRRGIQQQTGSSKGMCPFSQSSSSSSTSSSYHNHQQQQQQQHRESTELMLMDSSPVATRNHSDGDEVAGGEAHHLIEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGAGELVKHRLFIDWRRRPDAPDMNPYMVPHHFSNWNHGRLFLQPFQRGPPVPSFTQQHPHSQYSHHLLLEASSNIAQQHSHNYPHSYVYGIGNTSPAYYNTCFHNSSISTNATVVNANPCAGGSGNYVRSGATASQLLSQHELEIMQMQRGCNSVSGSSGGEPMVFNSVPVVQGKVAAKRLRLFGVNMDCPMDHSDLFSSSTIPTTYSHAPHFSSSSSTSSTPLVQLRKFNSQLEAVPSDEESSEKGKASMSLDLDI