Gene Details:

  • Gene ID: Neem_908_f_2
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Azadirachta indica
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_006446960.1  — V-type proton ATPase subunit C
  • Refseq:  XP_006446962.1  — V-type proton ATPase subunit C
  • Refseq:  XP_006468875.1  — V-type proton ATPase subunit C
  • Refseq:  XP_006468876.1  — V-type proton ATPase subunit C
  • Refseq:  XP_006468877.1  — V-type proton ATPase subunit C
  • Swissprot:  Q9SDS7  — VATC_ARATH; V-type proton ATPase subunit C
  • TrEMBL:  A0A067E0G2  — A0A067E0G2_CITSI; V-type proton ATPase subunit C
  • TrEMBL:  A0A2H5Q4L7  — A0A2H5Q4L7_CITUN; V-type proton ATPase subunit C
  • TrEMBL:  V4U2W4  — V4U2W4_9ROSI; V-type proton ATPase subunit C
  • STRING:  XP_006468875.1  — (Citrus sinensis)
  • STRING:  XP_006446960.1  — (Citrus clementina)

Gene Ontology:

  • GO:0015991  — Biological Process — ATP hydrolysis coupled proton transport
  • GO:0033180  — Cellular Component — proton-transporting V-type ATPase, V1 domain
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0015078  — Molecular Function — hydrogen ion transmembrane transporter activity

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Neem_908_f_2|Azadirachta_indica|B3|Neem_908_f_2
Protein Sequence:
  • >Neem_908_f_2|Azadirachta_indica|B3|Neem_908_f_2
    MMMDQTALTSSVHEKTEACALMAGVEGVTVKGDKTRFGSDRGGSTSDLVSAVTSLVFSSAAQVIDPNRLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPILESKEGIFISMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLQLGDFIIVYQDNQNQNYVIQAKKASDQDMYTNFTSDSVSDILLNDYEVNRSSSFYVNYPMAEDTGLSFIYDTTTFSNDSPLDFLGGSLTSYSREKTQSGPEMASRYWVVSLPVQNSASTLGNQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLLKSNSFVEGVSHKIRRQIEDLEKLSGTESSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLREIVDAIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSTKQLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSPEAQESRKQELERLVNDQESLKTSLLNWCYTSYGEVFSSWMHFCAVRIFAESILRYGLPPNFLACVLAPPVKSEKKVCSILEGLSGSANRLYLLIAVLNLYFHDS