Gene Details:

  • Gene ID: Neem_35930_f_1
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Azadirachta indica
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015570524.1  — auxin response factor 2B isoform X2
  • Swissprot:  Q94JM3  — ARFB_ARATH; Auxin response factor 2
  • TrEMBL:  A0A2I4G7Z9  — A0A2I4G7Z9_JUGRE; Auxin response factor
  • TrEMBL:  A0A445C1W2  — A0A445C1W2_ARAHY; Uncharacterized protein
  • TrEMBL:  B9RFY9  — B9RFY9_RICCO; Auxin response factor
  • STRING:  XP_002512658.1  — (Ricinus communis)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Neem_35930_f_1|Azadirachta_indica|B3|Neem_35930_f_1
Protein Sequence:
  • >Neem_35930_f_1|Azadirachta_indica|B3|Neem_35930_f_1
    MAAETSGEMFLGQSVCRSETTASMEKVDSSGDALYKELWHACAGPLVTVPRQGDVVFYFPQGHIEQVQASMNQASDQQMPAYDLPDKILCRVVNVQLKAEPDTDEVFAQMTLLPLSKEDEKSVEKKAAGPLPPRPRVYSFCKTLTASDTSTHGGFSVLRRHAEECLPALDMSKQPPTQELVTKDLHGNEWRFRHIFRGIVQYLLQVAGLSPGKCLRGLRLQSSMTFAYYI