Information report for mrna29447.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004300566.2 — PREDICTED: uncharacterized protein LOC101310520
- TrEMBL: A0A2P6RMW9 — A0A2P6RMW9_ROSCH; Putative transcription factor B3-Domain family
- STRING: XP_004301867.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004498177.1
- Manihot esculenta: Manes.15G145100.1.p
- Medicago truncatula: Medtr4g068320.1, Medtr4g068320
- Prunus mume: XP_008243867.2
- Prunus persica: Prupe.7G143500.1.p, Prupe.3G083400.1.p, Prupe.7G039600.1.p
- Pyrus bretschneideri: Pbr005643.1, Pbr005640.1, Pbr030271.1, Pbr019198.1
Sequences
CDS Sequence:
- >mrna29447.1-v1.0-hybrid|Fragaria_vesca|B3|mrna29447.1-v1.0-hybrid
ATGGCAACAGAAAGAAACCAATCTTTTATCAGGGTTCTTCAGGGTGATCGGTTCTCTTTCAAGTTGAAAATCCCTAGCGCATTTCTCCAGTGTTTTAATGGCTCTGTACCTTCCCAGTGCTGTCTTCGAACCCGAGGTAAGGGTTGGATTGTTTATGTGGAGAAGGTTAATAACAAGTTCTATTTCCAACTGGGTTGGAATGATTTTGTGCAAGACAATGGCTTAGTGTGTGGTGAACGTCTACTCTTCGATTATGCTGGAAACTCACAATTCCATGTGGAAGTATTTGGAATAAATACCTGCAAAAAGCTGTGTGTGCCTGAGATGGAAGAAGCTAATGAACATCAGGATGAGATATCTCTTGATATCTTGGATGACTTTCCACCTTGTCCAAGGAAAATACAGGACAAATCTTTGCTTTCAAGTCATCTGCCTCACAAGAGAAACAAAACAAGTTCTAGTGGTAAAGCAGATATCACCCTCAGCTTCCCAAAAAGGTTTCCACATCTTGAGAAGTCAGCAATGAAAAAGAAAGATGCACATTGGTTCAAATCAGAAATGATAAACATTTCTGATAATGATTCTTGTGATCATGATGAGAAAGAGTATGAGGATGATGTTCATAATGAGGAGGATGAAGACGAAAATGAAGATGGAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGAAGATGAAGAGATGGAGGAGGAAGATGATGATTCTGTTGAAACCCACAACGAGTCTTCACGATGCTCAAGAAAAGTGGGGAAATTAGCATCGATTCTTCACCAGAGAAAGAGAAAAAGTTCTAATGCGAAAGCAAAAACCAAAGTCAATGCTGCTGGTGGTTTGTCTGGTGAGGAAAAGATTCTAGGAGCTATAGCTCTACAAAGAGCTAATATCTTCAAATCTAATTCTGTCGACCCTTGTTTCGTGGTTTCCTTGTCTGCCACATATGCTGGTGGAAGTTTTCTTGCTGTGCCATGCAGTTTTGCCGAGAAACATCTTAAGTATCGGCAGCCTGGCCACATCACCCTTAGGGTTGAGAAGAGATTTTGGTATGTCAAGGTCAATTATCTTAGAAATATAACAAGATTACAGGCTGGCTGGACTAAATTTGCACTTGACAATAATTTGAAGACTGGCGATGCTTGTGTTTTTGTATTGACCAATGCCATTGAATTTGAATATGATGTTGCAATTTTCCACATTACAGATGCTAAGCCTAGTAATACTGGAAATGTTGTTCTTGACCGAGCCCTCGTCGTTGCTCTGGCGCTCGTCACCCTTCGCTCGGCGCTCAGGGCTCGATGCTCTGCTCTTGTCAATCGGTGCTCGGTGCTCGGCTGTCGACCTTTGGCGGTCGACATTTGGCGCTCGCCGCTCGGCCTAACTGAAGCAGATCTGGTCCTGAGCCTCCTCCTAAGCGTCGGCGACGAATGTAGCAGTGATTTTTTCAAGTCACAAGGTGAAAAGGTGAGTGGACTTGAGGAAGGTGTGAGGATTCTAAGTTGCAGCGTCGCTAGCCTCCAGCAAATTGGGGTCCCGAACAGCGTCCTTGAGGACGGTGAGCTTTGCTGGGCGGCGGAGGAAGCTTTGGGTGCCCAGAGCAATTTTTTGGTTTGGGCTTGGGTCCTTGACAACGGGCTGGAGGTGTCAGTAACTGGTTACAAGGGAAATTTTGGTGACCGGAGTCCCGCGGTAGAGGAAATTCCGGTGACCAGAGTCCGACGCCCGAAGATCCCCAGAGCTTTTCTTAGGCATTTTGATGGGAATGTACCTGAACAATGCCAACTTAGAATCCTCACTCAAACTTGGCTTGTTGATATTGAAATGGATAATCACAAGTTCTATTTCCAAAATGGTTGGAAGGAATTTGTGCATGAGAATGGTTTAAAGGGTCGCGAGTTTCTAGTTTTTTTCTATGATGGAATTTCGGAGTTCTATGTCCACATATATGGGGAAAATGCCTGCAAAAAGGAGTTTGCAGAGGTCACTAGGAACTATGTTGCTAGCTTCAGAGAGATGGAAGAAGCTGATAGTGATGACACATCTGTTGAAATCTTGGATGACTTTCCACCCAGCTCAAGGAGAGCAGGGCTAGGGAACAAATCTTCGTTACCAAGTCATCAGACTCACAAGAAAGACGGTACAAGTTGGAGTAATAAAGCAGTAAATGGAGCAATGTATAAGAAATCAGGAACTACAAGTATAGATGGATTTCCGGCGGAACAATTTGTGGGAGGTACCTCTAGCTCAAAAAGACTCGTACAACCAGAATTGGAGGCTCTTGGGAGGATGCACATTGATGACGACGATGATGACAAAGAAGAGGAGAGCGAGGAGGATGAAACTGAAGCTGACAGTGAAAATGAAGATGAGGAAGAGGAAGAAGAAAGTGATGGAGATGAAGAAAAAAGTGATGATTCTATTGAAATTCTGTACGAGTTTCCACAATGCTCAAAAGCAAAAACAATGAGGAAATCATCAGGGCTTCACAAGGGAAAGATAAACAGTTCTAAAGCTAAACCACAAAGCAGCATAACAGGTGCTAGTGGCTCATCTAGCAATAAAAAAATCACAGTAATGAAACACAAGGGAACCGGAGACATTATAGCTCGTTGTAGAGCTAGTGATTTTATATCCAAATCTGACAAGCCTTCTTGTTCAATTGCTATGTCTCCTTCACATGTTCATGCAGCTTGGGTGCATTTTCCTTGTCTTTTTGCCGAGAGACATCTCAAAAAGCATTGTAGTTGCATCAACCTTCGGGTTAATACGAGAAGTTGGTGTATCAGTCTCTATCATGTCAAGAAATTTGTCAGATTACAAACTGGTTGGAGGCAATTTGCGCAGGCAAATAATCTGAAAGAGGGTGATGTGTGCGTCTTAGTGTTGATTGACAACATCAAATATGTATTTGATGTTACAATTTTCCGGGCCACAGAAGCTGCAAATTGCACCTTGCCAGGGGGAAGGCAAATTACCGAGGTTCAATTCAAGTCAAAGAAAGAAAAAGAGAAAGCTGGATAG
Protein Sequence:
- >mrna29447.1-v1.0-hybrid|Fragaria_vesca|B3|mrna29447.1-v1.0-hybrid
MATERNQSFIRVLQGDRFSFKLKIPSAFLQCFNGSVPSQCCLRTRGKGWIVYVEKVNNKFYFQLGWNDFVQDNGLVCGERLLFDYAGNSQFHVEVFGINTCKKLCVPEMEEANEHQDEISLDILDDFPPCPRKIQDKSLLSSHLPHKRNKTSSSGKADITLSFPKRFPHLEKSAMKKKDAHWFKSEMINISDNDSCDHDEKEYEDDVHNEEDEDENEDGDEEEEEEEEEEEEEEEEEEETEDEEMEEEDDDSVETHNESSRCSRKVGKLASILHQRKRKSSNAKAKTKVNAAGGLSGEEKILGAIALQRANIFKSNSVDPCFVVSLSATYAGGSFLAVPCSFAEKHLKYRQPGHITLRVEKRFWYVKVNYLRNITRLQAGWTKFALDNNLKTGDACVFVLTNAIEFEYDVAIFHITDAKPSNTGNVVLDRALVVALALVTLRSALRARCSALVNRCSVLGCRPLAVDIWRSPLGLTEADLVLSLLLSVGDECSSDFFKSQGEKVSGLEEGVRILSCSVASLQQIGVPNSVLEDGELCWAAEEALGAQSNFLVWAWVLDNGLEVSVTGYKGNFGDRSPAVEEIPVTRVRRPKIPRAFLRHFDGNVPEQCQLRILTQTWLVDIEMDNHKFYFQNGWKEFVHENGLKGREFLVFFYDGISEFYVHIYGENACKKEFAEVTRNYVASFREMEEADSDDTSVEILDDFPPSSRRAGLGNKSSLPSHQTHKKDGTSWSNKAVNGAMYKKSGTTSIDGFPAEQFVGGTSSSKRLVQPELEALGRMHIDDDDDDKEEESEEDETEADSENEDEEEEEESDGDEEKSDDSIEILYEFPQCSKAKTMRKSSGLHKGKINSSKAKPQSSITGASGSSSNKKITVMKHKGTGDIIARCRASDFISKSDKPSCSIAMSPSHVHAAWVHFPCLFAERHLKKHCSCINLRVNTRSWCISLYHVKKFVRLQTGWRQFAQANNLKEGDVCVLVLIDNIKYVFDVTIFRATEAANCTLPGGRQITEVQFKSKKEKEKAG*