Information report for mrna29445.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011465844.1 — PREDICTED: B3 domain-containing transcription factor VRN1-like
- TrEMBL: A0A2P6RMY3 — A0A2P6RMY3_ROSCH; Putative transcription factor B3-Domain family
- STRING: XP_004301864.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Daucus carota: DCAR_003837
- Juglans regia: WALNUT_00011203-RA
- Malus domestica: MDP0000125949, MDP0000298218, MDP0000266051, MDP0000316701, MDP0000227080, MDP0000236750
- Prunus mume: XP_008243867.2, XP_008240722.1, XP_016651550.1
- Prunus persica: Prupe.3G083400.1.p, Prupe.7G143900.4.p, Prupe.7G143900.3.p, Prupe.7G143900.1.p, Prupe.7G143900.2.p, Prupe.7G143600.1.p, Prupe.7G044800.1.p, Prupe.7G143700.1.p
- Pyrus bretschneideri: Pbr025044.1, Pbr025043.1, Pbr019385.1
Sequences
CDS Sequence:
- >mrna29445.1-v1.0-hybrid|Fragaria_vesca|B3|mrna29445.1-v1.0-hybrid
ATGGCTTCTTCGTATGTTCGCCGGAAATGTGCTGATCACCGGCCAAGCTCGTCTGCAACCACTCCTCGGCGTTTTCTCGAGGTCATTCTAGACGACACTTCCAGAGAGAGAAAGCTCAGGATTCCAAAGAGCTTTTTGGATATATATGGAGAAGATCTATCAAATTGGGTGTACTTTAAGCTCCCATATGGTCCAGAACTAGATATAGGACTCACAAGCTTTAATGGTGAGGTCTGGTTTAGGAAAGGTTGGCCAGAGTTCTCTAAGCTGTACTCACTTGAGAAAGGTTACTCGCTAATTTTCGGGTATGAAGGGAATTCTAGGTTTCAGGTTTCCATATTTGATGGAAGCAACAACATGGAGATTGACTATACCACAAGAAGAATGCTTGGAAGTGAAGAGAGTGATCAAGATGATGATATATCTCTTGATATCTCGGAGGATATTCGACCAAATGTTGATTCTGAGGAGCGTGTAAAGAAAGAAACACATTGGTCAAAATCAGAAATGTTAAGGAAAAACCAGTTTGTAGCGGAAAGACATGGGGGAGGCAAAGCAAGACTGTTTCAGAGAGCTAAATCTTACAACTGTTCTTTCAAAGTTCCCATGCATTCCACTTATATCAATCATAATCTTTTGTGGCTGCCTAAAGCATTTGTCAAGACATATCTTGTTAAGCAACCTACAGATGCTGCACTTAAAATTTCAGGTGGAAAGAAAAGTTGGCCTGTTAAATTGAGATATGAAGAAGCAAAAGGAAGAGTCAAATTCCAGTCGGGTTGGACTGACTTTGTGAGAGACAGAAGTTTAAAAGAGGGAGATATCTGTGAGTTTGTGTTGGTTGACAGCAAGAGACATGTATTTGAAGTTAAGATAACAACCGCAAATCACACCTTGTCACCAGACATTGATGATGGTAATGATGAGGAAGATGAACAAGAAGATGAGGATAGTGATGATGAATCAATTGAAATTTTGGATCATTTTCCGCCACATCTGGAAACAAAGGAGAAATCTCCACTGGAATCCCAGCCTCGCAAGAGGAAGAGACATAGTTCCAGAACTCTGATAGACATATTCCCTGAAGAAAGACCTGTGGTTCCTAGGAAGATGCATCCTCCTATTACCGCAAGTTCTGGAAAAGTTCCGAGAGCTAATGGTTTCGAATCTGCAAACCCTGATTTCAAGATTCTACTAAAACCCGCATATATCCATGGAAATTATTTGTATATGCCAGCCAAGTTTGCCAAAAGATATCTTGTTAAACAGCCTGGTCATGCCATCCTTCAGAAACTTCCATATAAATTTGTGAAGAAATATGGAGGAGAGCTATCAAGTTCAGCATCTCTAAAGCTTCCGGATGGTTTAGAATGGGAAGTGGATATCACCAGGTGTGATTCTAAGGTTTGGTTCGAGAAGGGTTGGGAAAATTTCTCTTATTTTTACTCCATTGGCCACGGCCACTTTCTGGTTTTTGGATACCAAGGGAATTCTAAATTCGATGTTTGCATATTTGATAGAACAGCCACAGAGATTGACTATTCCCGAACTGTGGAAGATGATGATTCATCTGGTGAAATTTTGGAGGACTGTCTAAGGGGTTCAAGGAATTCAGGTTCTGTTTCTCGCAAGAAAAACAGGAACAATTCAACTGGTAAACCAGAAATGGATGATAACAATGATGAAGGTGATGTGGGTAGTGAGGAGGGTGAGGATGAAGATAATCATTCTAGGAGAATGCATCCGGTCACATCAAGTATTCGAAAGGAAATAGCTCTTCAGAGAGCTAAAGATTATGAACCCGCACTCCCTCATTTTGTGATTGCAATCCGTACCTCAAGTATCCCTGGAGGTTATTTGTATGTGCCATCTGTGTTTAGCAAGACATATCTTGCTACGCAGCCTACTCACATCATGCTTCAAACGGTTTCAAATAAGGAACCCTGGTGTGTAGATATGCATTATGAAAGATCAGCATGCAGATTACGGGCTGGTTGGCCTGGATTTGTGAAAAGCAATAAATTAGTGCTGGGTGATGCTTGTGTCTTTGTGTTAAAAGACAGCAATGCATTTCTATTTGATGTTGTGTTTTACCGGGCCACATAG
Protein Sequence:
- >mrna29445.1-v1.0-hybrid|Fragaria_vesca|B3|mrna29445.1-v1.0-hybrid
MASSYVRRKCADHRPSSSATTPRRFLEVILDDTSRERKLRIPKSFLDIYGEDLSNWVYFKLPYGPELDIGLTSFNGEVWFRKGWPEFSKLYSLEKGYSLIFGYEGNSRFQVSIFDGSNNMEIDYTTRRMLGSEESDQDDDISLDISEDIRPNVDSEERVKKETHWSKSEMLRKNQFVAERHGGGKARLFQRAKSYNCSFKVPMHSTYINHNLLWLPKAFVKTYLVKQPTDAALKISGGKKSWPVKLRYEEAKGRVKFQSGWTDFVRDRSLKEGDICEFVLVDSKRHVFEVKITTANHTLSPDIDDGNDEEDEQEDEDSDDESIEILDHFPPHLETKEKSPLESQPRKRKRHSSRTLIDIFPEERPVVPRKMHPPITASSGKVPRANGFESANPDFKILLKPAYIHGNYLYMPAKFAKRYLVKQPGHAILQKLPYKFVKKYGGELSSSASLKLPDGLEWEVDITRCDSKVWFEKGWENFSYFYSIGHGHFLVFGYQGNSKFDVCIFDRTATEIDYSRTVEDDDSSGEILEDCLRGSRNSGSVSRKKNRNNSTGKPEMDDNNDEGDVGSEEGEDEDNHSRRMHPVTSSIRKEIALQRAKDYEPALPHFVIAIRTSSIPGGYLYVPSVFSKTYLATQPTHIMLQTVSNKEPWCVDMHYERSACRLRAGWPGFVKSNKLVLGDACVFVLKDSNAFLFDVVFYRAT*