Information report for mrna28757.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011467595.1 — PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
- TrEMBL: A0A2P6S0D7 — A0A2P6S0D7_ROSCH; Putative transcription factor B3-Domain family
- STRING: XP_004305844.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Gossypium hirsutum: Gh_D03G1685, Gh_A02G1527, Gh_A12G0629, Gh_D12G0646
- Malus domestica: MDP0000316701, MDP0000298218, MDP0000236750, MDP0000227080
- Manihot esculenta: Manes.10G031300.1.p, Manes.07G115200.1.p
- Prunus mume: XP_016651482.1, XP_008240722.1
- Prunus persica: Prupe.7G039600.1.p, Prupe.7G044800.1.p
- Pyrus bretschneideri: Pbr019385.1
- Ziziphus jujuba: XP_015890081.1
Sequences
CDS Sequence:
- >mrna28757.1-v1.0-hybrid|Fragaria_vesca|B3|mrna28757.1-v1.0-hybrid
ATGGCTTCTGTTCCCCTGCTGAGAGTTTCTTCCACCACACCCCATTTTTTCAAGATCATTCTGGACGACACTTCTAAACACAAACTTAAAATTCCGAAGAAATTTGTGATGAAATATGGAAAGGATCTATCAAGTTCAGTATGTCTTAAGCTTCCAAGTGGTTCTGAATGGGAAGTTGAATTGACAAGATGCAAAGGTAAGATTTGGTTTGAGAAGGGATGGCCAGAGTTCTTTATGTTCTGTTCACTAGACTACGGGAGTTTCCTGGTTTTCCGATATGAAGGAAATTCTCATTTCCGTGTTTGCATATTTGATATGAGTGCCACCGAGGTTGATTATCCCATAACAATTCCCAAAATTGACGAAGCTGAAGATTTATCTATTGAAATCTTGGAGGATTTTCAACTCAATCCTAAAACAATAAGGAAATCTCCAGTACCATATCCTCCTCACGAGAAAATGAGAACAAGTTTCAGTGGCAAAGCAGAGATGCTTTCTGAAAGTGAGAAAACTCAACCTTGTTGTGACATGTTTGAGAAGCCAATCACAGACGAAGAATCATATTGCAGAAAATTACAAGCGAAAAAGAAAGATGGCAGTGTCACTAGAGGCTCGTCTGGCACTCAAAAGCTCCTAAATCAGACATCTCTCAAGGTCGTTCTTGGCAATGCTATATCTCTTCGTAGAGCTTATGATTTCAAAACTGAAAACCCTTTATTCATTGTATCCATGAAGCCTTCGGAAACACAAAGTTCTTTGTCTTTGCCGTTGAATTTTGCCAAACGACATTTTATTAAGCGGCCTGCTAGCAACATCACCCTTCAAATTTTGGACGGAAGGACATGGTCTGTTGAGTTCACATACAGTGAAGAAGAAGCTCGATTCCAGGAAGGCTGGTTGACATTTGTGAAGGATAATAATTTGGAAGTTGGGAGAAATAGTTTTCCGACCCAAAAGGATGGTGGAAACTCTTCTGGTTCTCAAACATTTCTAAAGCCAACAACACCTCATGAGGCTCCCAGTAGGATGAAGCAATTGACTGTAACTGAGAAAGCTGATGCCTTCAAGTCGGATAAACCTCCTTCTTTTAGGATTGCCTTGCAGCCTTCTTATATTGAACGACCTGTCATGTCTATACCAAATGAATTTGCCAAGAGATATCTTATGAATTTCCCTGCTGACATTGCCATCCTTAAAGTTTTGGATGGAAGAACTTGGCATGTTAAATTCAAGTATGATCATGCAAACTCGAGAGGCCGACTCATGAAGGGCTGGTTACCTTTTGTGAGGGAGAATAATTTGAAAGTCGGTGATGTGTGTGTCTTTACCCTGGTTAACAGCATTGAACTTTTATTTGAAGTTGTCTTTTTCCCCACCACAGAGTCTGCAAATTGCTCATCGCCTACAGGCCATGGCATAGGCTCAACTATTCAAAATGGAAGGACAGAATCTTCTGTAGTTAAAGTTGAACCCGAATGCAGCCTGAGCTGTGAAATTGGATTTAATCTAGGCAACAACATGTCAAAAACTAAGGGGCAGGTCACTCAAATGCCTTCTTCATCTTTGAGGACATCAAGGGTTAATCTTGAAGCTGCTAGCAAGTTTTCACCAAAGAATCCCTTCTTCAAAGTCACCCTGGGGTCAGGCCATAGTCTGCATGTACCAGATAAATTTGCTAGGAGTTTCATCAAACATGTCAAACAAACAGGGATCCTTCAGGTCAAAGATAGATCATGGCACGTGAATTTGATTCCTTTTAAGAAGCCACGCGCTATTTCAATTTGTGGAGGTTGGGCTGCATTTATAAAGGAAAATTGTTTAAGAGAAGGAGATGTTTGCATATTTGAGCTCATGGAGATGATTGATATTGATCAAAAGGCTCAGTCCCCAAAAGCCAAGACTCAAGATATTGAAATGGCAACATATCAACCATTTGGTCCGCTGTCGAAGGAAGTAGTGACTGAAATATTGGAGCTTCCATTGCCAGTGAGGTCTTGCACAAGGGTCTTGAAGCTTGAGAAGTCAGTGATGTAG
Protein Sequence:
- >mrna28757.1-v1.0-hybrid|Fragaria_vesca|B3|mrna28757.1-v1.0-hybrid
MASVPLLRVSSTTPHFFKIILDDTSKHKLKIPKKFVMKYGKDLSSSVCLKLPSGSEWEVELTRCKGKIWFEKGWPEFFMFCSLDYGSFLVFRYEGNSHFRVCIFDMSATEVDYPITIPKIDEAEDLSIEILEDFQLNPKTIRKSPVPYPPHEKMRTSFSGKAEMLSESEKTQPCCDMFEKPITDEESYCRKLQAKKKDGSVTRGSSGTQKLLNQTSLKVVLGNAISLRRAYDFKTENPLFIVSMKPSETQSSLSLPLNFAKRHFIKRPASNITLQILDGRTWSVEFTYSEEEARFQEGWLTFVKDNNLEVGRNSFPTQKDGGNSSGSQTFLKPTTPHEAPSRMKQLTVTEKADAFKSDKPPSFRIALQPSYIERPVMSIPNEFAKRYLMNFPADIAILKVLDGRTWHVKFKYDHANSRGRLMKGWLPFVRENNLKVGDVCVFTLVNSIELLFEVVFFPTTESANCSSPTGHGIGSTIQNGRTESSVVKVEPECSLSCEIGFNLGNNMSKTKGQVTQMPSSSLRTSRVNLEAASKFSPKNPFFKVTLGSGHSLHVPDKFARSFIKHVKQTGILQVKDRSWHVNLIPFKKPRAISICGGWAAFIKENCLREGDVCIFELMEMIDIDQKAQSPKAKTQDIEMATYQPFGPLSKEVVTEILELPLPVRSCTRVLKLEKSVM*