Information report for mrna28755.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011467598.1 — PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
- Refseq: XP_011467599.1 — PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
- Refseq: XP_011467600.1 — PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
- Refseq: XP_011467601.1 — PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
- STRING: XP_004305843.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Gossypium hirsutum: Gh_D04G0093
- Malus domestica: MDP0000316701, MDP0000236750, MDP0000124555, MDP0000931057
- Manihot esculenta: Manes.04G144400.1.p, Manes.11G020400.1.p
- Prunus mume: XP_008240722.1, XP_016651482.1, XP_008228203.1
- Prunus persica: Prupe.7G044800.1.p, Prupe.3G042100.1.p
- Pyrus bretschneideri: Pbr042626.1, Pbr015228.1, Pbr025043.1
- Ziziphus jujuba: XP_015865686.1
Sequences
CDS Sequence:
- >mrna28755.1-v1.0-hybrid|Fragaria_vesca|B3|mrna28755.1-v1.0-hybrid
ATGGCCTCACAGAACCAAAAGCCCACCCCAACAGCATTGGTCAAGGGGAAGTGGACTCCCGACGAAGATGAGAAACTAATCGAGGCTGTTGCCCTTCATGGTGCAAAGAACTGGACCTCAATTGCCTCCAAAGCAGGGCTGAATCGGAGCGGCAAGAGTTGCAGGCTGAGATGGGTGAACTATCTGAGACCCAACATCAAGAGAGGCGACATGTCTGAACAGGAAGAGGACTTGATTATTAGGCTGCACAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGAAGATTGCCGGGTCGAACAGACAATGAAATCAAGAATTACTGGTACACTCGTTTAAGCAAGAAAATCCAGCAGAAAGAGAAGCAAAGTAACAATGGAGCTAATTCGACGATACAATTTCCGGCAGTAGATGAGAAAACAAGTGTGGCAGATGATGATCAGAAGGTCCATGTAGAAATGAAGCAAGAGTGCGTGTCATCAGCAGTGCGTACAAGTGCGGCTCTAATCAAGAAAGAGGAGGTGATCGATCCTGAGGACCACTCCAGCACTTGCATTAACAATATTGATGCTGACGAGTTCCTTAATCTTCTCAATGAAGAAGAACCTTTGAGTTGGGAGGAACCTCTTGAAGTTGAGCAATGGCTTCTCTTCTCCCGCCAAGATTTTAAAATTCCGAAGAAATTTGTGATGAAATATGGAAAAGATCTATCAGATCCGGTATGTCTTAAGCTTCTAAGTGGTTCTGAATGGGAAGTGGAATTGATAAGATCCAGAGGGAATTCTCATTTCCATGTTTGCATATGTGATATGAGTGCCACGGAGATTGATTATCCCATAACAATGCCCAAGATTGAAGAAGCTGATGAAGATGATATCTATCTATTGAAATCTTGGAGGATTTTCAATCCAGTCCTAAAACAAGAAGGAAATATCTATTACAGGGAAAATGGTTTTCTGACCAAAAGAGAAGGTGGAAGCTCTTCTGGTTGTCAAAAATTCCTAAAGCAAACATATGAGATACTTGGGAGGATGAAGCCATTGACTGCAACTGAGAAAGATAATGCCTTCAATTCTGTTAATCCTTCTTTTAGGATTGTCATGCATCCTTATTCTATTCGTTATGAATGTGTGTCTTTGCCAAATGAATTTACCAGGAGATATCTTATGAAGCTGCCTGCTGGAATTGTTAAACTTCGAGTTTTGGATGGAAGAACTTGGTCTGTTAAGTTCAAGTATGACCATTTGAACTCAAGAGCTCGACTCCATGGTGGTTGGTCATCTTTTGTTAGGGGAAATAGTTTGAAAGTCGGTGATGTGTGTATCTTTACCCTGATTAACTGTATTGAACTTCTATTTGAAGTTGTCTTTTTCCACACCAAAGACTCTGCAAACTGCCCCTCATCAACAGGCCATGGTAGAGGAGCGTCTGTTCAAGTCGAAGAAAAGAAACACCCCATACTTGAAGTTGAACCAGATTGCAGCTTGGATTGTAAAATTGGCAAGAACAATCTGTCAAAAATTAGTGGGCAGGTTACTCAAATGCCTTCTTCATCTTTGAGGACCTCAAGGGTTAATCTTGAAGCTGCAAGTAAGTTTTCATCAAAGAATCCCTTCTTCAAAGTCATCATGGGGTCAGGCCATACTATGCATATACCAGCTAACTTCTCTAGGAGTTTCATCAAACATGAAAAGCAAACGGCAATCCTTCAGGTCAAAAATAGATCGTGGCACGTGAATTTGAATCCTTATAAGCCAGGTGCAACTTCAATTTGTGGAGGTTGGGCTGCATTTGCAAAGGAAAATTGTTTAAGAGAAGGAGATGTTTGCATATTTGAGCTCATGGAATTGAATGACATTGTACTGAAAGTTCACGTTTTTAGATGTTGA
Protein Sequence:
- >mrna28755.1-v1.0-hybrid|Fragaria_vesca|B3|mrna28755.1-v1.0-hybrid
MASQNQKPTPTALVKGKWTPDEDEKLIEAVALHGAKNWTSIASKAGLNRSGKSCRLRWVNYLRPNIKRGDMSEQEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWYTRLSKKIQQKEKQSNNGANSTIQFPAVDEKTSVADDDQKVHVEMKQECVSSAVRTSAALIKKEEVIDPEDHSSTCINNIDADEFLNLLNEEEPLSWEEPLEVEQWLLFSRQDFKIPKKFVMKYGKDLSDPVCLKLLSGSEWEVELIRSRGNSHFHVCICDMSATEIDYPITMPKIEEADEDDIYLLKSWRIFNPVLKQEGNIYYRENGFLTKREGGSSSGCQKFLKQTYEILGRMKPLTATEKDNAFNSVNPSFRIVMHPYSIRYECVSLPNEFTRRYLMKLPAGIVKLRVLDGRTWSVKFKYDHLNSRARLHGGWSSFVRGNSLKVGDVCIFTLINCIELLFEVVFFHTKDSANCPSSTGHGRGASVQVEEKKHPILEVEPDCSLDCKIGKNNLSKISGQVTQMPSSSLRTSRVNLEAASKFSSKNPFFKVIMGSGHTMHIPANFSRSFIKHEKQTAILQVKNRSWHVNLNPYKPGATSICGGWAAFAKENCLREGDVCIFELMELNDIVLKVHVFRC*