Information report for mrna27595.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011458476.1 — PREDICTED: disease resistance protein RPM1-like isoform X1
- TrEMBL: A0A2P6PRR2 — A0A2P6PRR2_ROSCH; Putative P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L
- STRING: XP_004292512.1 — (Fragaria vesca)
- GO:0003677 — Molecular Function — DNA binding
- GO:0043531 — Molecular Function — ADP binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Malus domestica: MD10G1003800, MD05G1024900, MD06G1152400, MD05G1025200, MD06G1154100
- Prunus avium: Pav_sc0010946.1_g010.1.br, Pav_sc0000387.1_g020.1.br, Pav_co4060495.1_g010.1.br, Pav_sc0009370.1_g040.1.br
- Prunus persica: Prupe.8G010700, Prupe.8G010600, Prupe.8G008500, Prupe.6G199100, Prupe.8G008900, Prupe.8G009400, Prupe.8G009600
- Ricinus communis: 29757.t000032
- Rosa chinensis: RchiOBHm_Chr6g0274421, RchiOBHm_Chr6g0278191, RchiOBHm_Chr2g0101551
Sequences
CDS Sequence:
- >mrna27595.1-v1.0-hybrid|Fragaria_vesca|B3|mrna27595.1-v1.0-hybrid
ATGGCTTCTCCTGCAATAGACCTTCTGATTGGCAAAATAGTATCGTTTCTTGAAAGTGAAGTCTCATTGCTAGAAGGAGTTCATGATGAGCTAGGAGAAGTCAAGCTTGAGCTGTTAACCATGAAGGCCTTCTTGGAGGATGCAGAAAGGAAGGGAGCTCTCGGTGAAGTAGAGAAAACATGGGTGGCAAATGTGAGAGATGTCTCCATTGACGTAGAAGACATCATGGATGAGTTCACGTATCAGACAAACAAGCGAAGAAGTTGGGGTCCGTTCACAAAAGCCTTCAGTAAGACACTACGTCTCCCACAAAACATTTGGGAGAGGCATCGGATTGCCACAAAGTTGCAGAAGATCATGAAAACAATCAAAGATATTCCAGAGAGAAGCCGGCGTTATGGTTCTTTACGCATAGAAGGCAGTACTTCCCACCATGTTGGGAACCGGGTCGAAGTCTGTGGCGAGTCGTCTCTTTTCTTGAAAGATGATGATCTTGTGGGGATCACAGATGCTAAGAAGAAAATAGTTGGATGGTTATCGTCTGGCCATTCTCAGAGAACTGTCATTACGGTTGTAGGAATGGGGGGTTCGGGAAAGACGACCTTAGTTGCAAGCATCTTCAACAGTCAAACTGTACAACATTTCAACTGCTACACCTGGATTACAGTCTCACAAAGTTATACTATTGAAGATCTGTTTCGAGTCATGATCAATGAACTCTTTGCAGCGGCACAAATAGATGTTCCTCAAAACTTGAGCAACATGAGTTATAGACATTTAGTGGAATTGCTTGTCCGCTACTTGCAGCCAAGGAGGTATATGATTGTCTTAGATGATGTGTGGGACACAAATCTTTGGAGATCCATAGATGTTGCACTTCCCAAAGGAACTCATGGTAGCCGCATCATGCTTACAACTCGGAACAAAGACATTGCTTCTCTGGCGTTTGGAGTCGAGAGTCATGTTCATCAGATTGAACCTCTTAATACAAGTGATGCTTGGGATCTTTTCTCCAGAAGAGCATTCTCTAGTGTGAGAGACAAGTCTTGTCCACCAGAGCTTCAACTCATAGCTAGGGAGCTCATGATGACCTCTTCTTCATTGGAGATAGTACTACCATCTGGTTTTAAACTGTTGAGGGTCTTGGATCTTAAATATGCACCGATTCATGAATTGCCAGATGAAATAATGAAGTGCTTCAACTTGACGAGTTTGAACTTGAAAGGGACAGAAGTCAGAAAGCTTCCAAAACAGATAGGGAATCTCCAGAACTTGGAAACGTTGGACATTAGGGACTCCAATATAAGGCAAATCCCTCCTGCATTTTATAAGCACTTTGATTGGAAGGGACCTCAGCAGACCTACCTTCGGACCCAGGTTAAAACTTGGCTTGTTAATGTGGAAAAGATTGATGGTAAATTCTTTTTCCTAAAGGGTTGGAAGAGATTTGTGCATGGCAACGGTCTGAAGGTTGGTGAATTTCTTGTTTTTCGATATATTGGAAATACAAGATTCTTTGTTGACATATATGGAAGAAATACCTGCAAAAAGGATTTTATAAAGGGCGTTGAGAAAAGTGAGAAGGAGAGTCATGGTAATGAAGATAACCAAGGTGTTGCAGAAGGAACTAGGCATGGTCAAGCCACAAACAGTATTCCCATCAAAGAGGAAGTAATTGATACTGAATACGAAACATCGTTGCATCCGTTGACTAGAAATACTGGAAAAGATGTTGCTCTTGAGAGAGCAAACACTTCCAAATCTGAAGATGGAGATAAACAAGAAAATAATGATGATGATGATGAGGAGGAGGAGGATGACGAAGAAGAAGATCAGGAGGATGATGATGATTCTATTAAAATCCCACATGACCTTCCACCATGCCCAAAAACAAAGGAGATATCTCCATTAGGACCAGTACCCATCTGTATTAAGAGAAATCGATCAAGTTCTAGATCTAGTACTAACATTGGTGGAGAAGATGTAGTACTTCAGAAAGCCTATGCTTTCAAATCTGCAAAGCCTTCTTTCGTTGTTCCCATGTATTTATCGTATGTCCACGGAGGTTTTCTGAATGTGCCATCTAGTTTTGCCACGAGATATCTTACGAAGCGGCCTAGTCAAGTCATCCTTCAGGGCTCGTTGAAGGTGGCCGCCAAGGGCCACTTTCCACTAGCAGTAAACCTGCCAAAGCTTGATGAGGACTGTCGTGATTCCCAAGCCTAA
Protein Sequence:
- >mrna27595.1-v1.0-hybrid|Fragaria_vesca|B3|mrna27595.1-v1.0-hybrid
MASPAIDLLIGKIVSFLESEVSLLEGVHDELGEVKLELLTMKAFLEDAERKGALGEVEKTWVANVRDVSIDVEDIMDEFTYQTNKRRSWGPFTKAFSKTLRLPQNIWERHRIATKLQKIMKTIKDIPERSRRYGSLRIEGSTSHHVGNRVEVCGESSLFLKDDDLVGITDAKKKIVGWLSSGHSQRTVITVVGMGGSGKTTLVASIFNSQTVQHFNCYTWITVSQSYTIEDLFRVMINELFAAAQIDVPQNLSNMSYRHLVELLVRYLQPRRYMIVLDDVWDTNLWRSIDVALPKGTHGSRIMLTTRNKDIASLAFGVESHVHQIEPLNTSDAWDLFSRRAFSSVRDKSCPPELQLIARELMMTSSSLEIVLPSGFKLLRVLDLKYAPIHELPDEIMKCFNLTSLNLKGTEVRKLPKQIGNLQNLETLDIRDSNIRQIPPAFYKHFDWKGPQQTYLRTQVKTWLVNVEKIDGKFFFLKGWKRFVHGNGLKVGEFLVFRYIGNTRFFVDIYGRNTCKKDFIKGVEKSEKESHGNEDNQGVAEGTRHGQATNSIPIKEEVIDTEYETSLHPLTRNTGKDVALERANTSKSEDGDKQENNDDDDEEEEDDEEEDQEDDDDSIKIPHDLPPCPKTKEISPLGPVPICIKRNRSSSRSSTNIGGEDVVLQKAYAFKSAKPSFVVPMYLSYVHGGFLNVPSSFATRYLTKRPSQVILQGSLKVAAKGHFPLAVNLPKLDEDCRDSQA*