Information report for mrna13877.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004302530.1 — PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A2P6R8G3 — A0A2P6R8G3_ROSCH; Putative chromatin regulator PHD family
- STRING: XP_004302530.1 — (Fragaria vesca)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Prunus mume: XP_008244865.1, XP_008244859.1, XP_008244871.1, XP_008244875.1, XP_008244888.1, XP_008244884.1
- Prunus persica: Prupe.6G293400.1.p, Prupe.6G293400.3.p, Prupe.6G293400.11.p, Prupe.6G293400.12.p, Prupe.6G293400.18.p, Prupe.6G293400.9.p, Prupe.6G293400.2.p, Prupe.6G293400.7.p, Prupe.6G293400.16.p, Prupe.6G293400.17.p, Prupe.6G293400.5.p, Prupe.6G293400.6.p
- Pyrus bretschneideri: Pbr014639.1
- Ziziphus jujuba: XP_015897449.1, XP_015897448.1, XP_015897450.1
Sequences
CDS Sequence:
- >mrna13877.1-v1.0-hybrid|Fragaria_vesca|B3|mrna13877.1-v1.0-hybrid
ATGGATCCGAGTGCTTGTATGAACGCCTACTGCGGCAGCTCGAGCTCGATCGAATGGAAGAAAGGCTGGGCTTTGCGATCTGGTAGATTCGCCAATCTATGTCACAAGTGCGGGGGCTTGTTGGAGGTTTTAAGTCCATGGTCTGTTGACTCTCTTCTGTTTCAACGTTGTGCTCTGTTCTTAACGGCCGCATGGTATTTGTGGCCGCGTCTTCATTGTGGGTGCATTGCTTCTAGGAGTCTGCTTGATTTCCTTGATGGTGGTGGTGTCAAGTGTACACACTGCACGAAAAATTCGGAACCTCACCCTATTGCAAGTGATGAAAAGCCTGATGGACCCGGCACATCCAAAATCAGTGAGCTGAAATCAACTCCTTCAGACAATCACTTGGATAGAAGCAATGTTGATAATGTGAAGCTTATCCAGTTGGAAAATGATAAAGAGTGTAATGGGCTCAGGAACTTGCTTCAATCTCAGAACAATGAAACAGTTGGGTTATTGCAGAAAATGAAGCAGGATGATGTTCCAGCACCTGTGGTTGAGATTGGAGGCACAGGTCTGTCAATATTTAATCAGACATCCAATGTATCGTCTGAAGGTTGTAAACCAGTAATTTATAGAGGAAACTTAGGAATAAATGATATGTATGAATCACTGCCGCACACAAATTTGAGTATGAGCCTGGGTGCACCTTCAGGATATGCAAATCCTTTTCCTGGTATCGTTGTTGACGAACACACTAGGACATCCTCCCTGTTCTTACAGGGAGCTAGGTCTCGTCATCTTTTACCCAAGCCCCCAAAGTTGGCCCTTGCCACAGGTTTGGAGGAAAATTCTACAATGGCTTCACAGTCACGTGTTGCACGGCCACCTGCTGAAGGACGGGGGAGGAATCAGTTACTTCCCCGATACTGGCCCAGGATCACGGACCAAGAGTTACAGCAAATATCTGGAGATCCAAATTCCACAATTGTACCGTTGTTTGAAAAGATGCTGAGTGCCAGTGATGCTGGTCGTATTGGTCGTTTGGTGCTCCCTAAAGCATGTGCTGAAGCGTATTTTCCTCCTATCTCTCAACCCGAGGGCCTTCCTTTGAGGATTCAAGATGTTAAGGGAAAGGAATGGGTGTTTCAGTTCAGATTCTGGCCTAACAATAACAGTAGGATGTACGTGTTAGAGGGTGTAACCCCTTGCATACAGTCGATGCAGTTGCAAGCTGGAGATACTGTGACATTCAGTCGTATGGACCCTGAAGGAAAGCTTATTATGGGGTTTCGAAAGGCATCTAATTCAGCTTCAATGCAGGACACCCATCTTTCTGCCATTCACAATGGCGCTCACTCAAGTCAAACTTTCTTTTCGGGTGTTATTGAGAACCTTCCTGTAATAAGTGGTTACTCTGGTCTTCTTCAGTCAACGAAGGGCATGGATCCGCATCTAAGTGCACTGTCCAAGCAATTGACTACAGCTCATGGTGATCTGAGCTGGCATAAATCTGAAAATCCTGAAAGCAGGGCAAGGGAAGGCTTGCTGCTGCAATCATTAGTGGTTCCGGAGAGAAAAAGAACTAGGAATATTGGGTCTAAGAGTAAAAGGTTGCTCATTGATAGCCAAGATGTTCTAGAGGTGAAGCTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCTCCTCCAGCTGTTAACCCAAGCACTGTCATGATCGAGGATCTTGAATTCGAAGAATATGAAGAACCTCCTGTGTTTGGCAAAAGGAGTATTTTCATAGTCCGGTCAACTGGGGAACATGAGCAATGGGCTCAGTGTGATGGTTGCTCTAAATGGCGAAGGTTGCCAGTTGATGTGCTACTTCCATCTAAGTGGATGTGTACAGACAATGTTTGGGATCAAAACAGGTGTTCGTGCTCTGCACCAGATGAATTAACCCCTAAGGAACTGGAAAGTTTTCTCAGACTGAGCAAGGAATTCAAGAAAAGGAGAATGGCAACAAACCATAATCCAACCCAGGAACATGAATCTTCTGGGCTTGATGCTTTGGCCAATGCTGCAATACTCGGAGACAATGTGGCTGACCCAGGAACTGCATCAGTTGCTACAACAACAAAACATCCCAGGCATCGTCCTGGCTGCTCATGCATTGTGTGCATCCAGCCCCCAAGTGGGAAGGGCAAGCATAAGCCTTCATGCACGTGCAATGTGTGCATGACAGTTAAACGACGTTTTAAAACCCTAATGATAAACAAGAAGAAACGTCAATCAGAACGTGAAGCAGAGATTGCCGGTAGAAACCAGCTTGCATGGGGTCCTAGGGATGATGCAGAAGTAGACAGCACTTCTAGGCATCTATCATCACACCTTGATCCTTCAGACAACGAAGCTAAGTCTCCAAATGAATTAGAATCTAAGAGCCAACTTAAAATGGCCGAAAGTGGGAAGGGAAAGTTAGACTTGAATTGCCATCCTGGCCGAGAAGTAGACTTGCCAGCGGAGCCAAGTCAGTTGAGCATGATGTCCCTTCTTCAAGTAGCAACGCTTCCTCTAGATAGTTATTTGAAACAAACCGGTCTTACCAGCTTGGTAACTGAACAGCAGACAAGCTCATCACCTCCTGTGCCACCACAAGCGACCGAGGAGAATGAGGAACAGCTTAATGGGGATCAATGTCTTGTTTCTATTGTTCAAGATCAGGAAAGTGGAGGTGAAGAAAGGCAGGATCAAAGCCAAGAGGATCCTCTATGA
Protein Sequence:
- >mrna13877.1-v1.0-hybrid|Fragaria_vesca|B3|mrna13877.1-v1.0-hybrid
MDPSACMNAYCGSSSSIEWKKGWALRSGRFANLCHKCGGLLEVLSPWSVDSLLFQRCALFLTAAWYLWPRLHCGCIASRSLLDFLDGGGVKCTHCTKNSEPHPIASDEKPDGPGTSKISELKSTPSDNHLDRSNVDNVKLIQLENDKECNGLRNLLQSQNNETVGLLQKMKQDDVPAPVVEIGGTGLSIFNQTSNVSSEGCKPVIYRGNLGINDMYESLPHTNLSMSLGAPSGYANPFPGIVVDEHTRTSSLFLQGARSRHLLPKPPKLALATGLEENSTMASQSRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASNSASMQDTHLSAIHNGAHSSQTFFSGVIENLPVISGYSGLLQSTKGMDPHLSALSKQLTTAHGDLSWHKSENPESRAREGLLLQSLVVPERKRTRNIGSKSKRLLIDSQDVLEVKLTWEEAQDLLRPPPAVNPSTVMIEDLEFEEYEEPPVFGKRSIFIVRSTGEHEQWAQCDGCSKWRRLPVDVLLPSKWMCTDNVWDQNRCSCSAPDELTPKELESFLRLSKEFKKRRMATNHNPTQEHESSGLDALANAAILGDNVADPGTASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCMTVKRRFKTLMINKKKRQSEREAEIAGRNQLAWGPRDDAEVDSTSRHLSSHLDPSDNEAKSPNELESKSQLKMAESGKGKLDLNCHPGREVDLPAEPSQLSMMSLLQVATLPLDSYLKQTGLTSLVTEQQTSSSPPVPPQATEENEEQLNGDQCLVSIVQDQESGGEERQDQSQEDPL*