Information report for mrna12617.1-v1.0-hybrid
Gene Details
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Functional Annotation
- GO:0009535 — Cellular Component — chloroplast thylakoid membrane
- GO:0009941 — Cellular Component — chloroplast envelope
- GO:0003677 — Molecular Function — DNA binding
- GO:0005506 — Molecular Function — iron ion binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Glycine max: Glyma.09G117200.1.p
- Gossypium arboreum: Cotton_A_35970_BGI-A2_v1.0, Cotton_A_17004_BGI-A2_v1.0, Cotton_A_34095_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G0646, Gh_A12G0629, Gh_A11G1749, Gh_D11G1906
- Manihot esculenta: Manes.07G115200.1.p
- Populus trichocarpa: Potri.010G191500.1, Potri.004G147000.2
- Vitis vinifera: GSVIVT01031852001
- Ziziphus jujuba: XP_015872063.1, XP_015878654.1, XP_015878653.1
Sequences
CDS Sequence:
- >mrna12617.1-v1.0-hybrid|Fragaria_vesca|B3|mrna12617.1-v1.0-hybrid
ATGTCACCGGCAGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCTCTGCCGCCTTCAACAGGCACCAGTACAAAACCCCTCAGATCACTTCCCCAAAATCATTGGCACCACTGCAATGCCAGAAGACTAGCTTCCAAGGGTTGTCACTTGGAGAAGCCAAAAGGGGTGTATCTGAATCCTTCATAGCTGAGAATATTAGTAGCGCTACTGTGAGAAGAGGTCGGCTGCTTAGCATAGTTGCAAGAACAGCTGGGGCTGCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGGAGGTGTTGTTACCATTACTGCTGTGGAAGGAGGTGGAAATGCAGCAAAGGCAGGACTCAAGGCAGGGGACCAGGTGCTCTACACTAGCAGTTTCTTTGGAGATGAATTGTGGCCAGCCGATAAGCTTGGATTTACTAAAACTGCTATCAACGCCAAGCCTGACAACGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGAGGCTAGAGCTACTCACATATGCCTTGACTGTGGATTCATATACACATTATCAAAACCTTTTGATGAACAACCGGATACGTACGCATGCCCTCAATGTATTGCACCAAAGAAGAGGTTTGCGAGATATGATGTGAACACCGGGAAACCTATCGGTGGCGGTTTGCCTCCCATTGGAGTCATTATTGGCCTTGTTGCTGGTCTCGCCGGTGTGGGAGCATTGCTTTCACTTCTCACTTTTGGAGTTGTCATGACACTGAGCTCACTCACAGTGTTTGTATTAAAGACCCCTCGGAGAGTTGTGAACTTGCTGTCTGATTCTGTGGCGAATTTCTTCAAAGTTATACTTTCCTCTACCATTGAGAATCAGAAACTGGATATCCCAAAAAAGTTTGCACTAGAATATGGGGAAGAACTGTCTAATGGTGCTACAGTAATTGTTCCAGCTGGTGATGTTTGGCAAGTGGGTTTGGAAAGAGCTCACAAGAGGATTTGGTTTGTGGACGGTTGGCCAGAATTTGCTGAACATTACTCCTTAACTGGTGGTCAGTTCCTAGTCTTTAGTTATCAAGGAGATTCGATATTCCATGTTCGCATTTTTGATTTCAGCTGTTGTGAGATCGAGTACCCTTCTGTTGGTCAAATTATCAAACATGAAGAGTATGTTGAACATGATGTTTGTGTGGATCAACATGTTACGAGGAAGAGGAAAAGCGTCGCTATTGCCAAGAAATTAAAGAAAGCCAAGTTGATGGTACAGAGAATGCCTCCCTCGCATGATGATCCCAGAAGAAAGAAGGAATATAAGGAAATATTTGTTGGGAACATGGCTGCTTACACTTTTCCTTACATGATAACTAGGATTGCCAAAGAACGTCAGAAGCTGATCCATGCTATCCAAATGTTCAAGTTAGAAAATCCCTTTTTCGCAGTTATCTTGCAGCAAGGTCATCTTAACAAGTCCTATCTGTATGTTCCAAGTGCTTATGCAATGAGATATATGAGAGGGTGTCCAGAATATATCAAGTTTGAGGATTCTACTGCAAACCAGTGGGATATCCGATGCCGCTTCACAACAGATACAGCAGTGAGAATAGGCAGGGGATGTGCAGAATTTTTCAGAGAGAATAATTTGAAGACTGGAGATGTCCTTCTCTATGAGCTGATCAATAAGAAGGATGTTGTGCTAAAGTTTTCGGTACTGCGTGCTGCTGGAAATGCAGTCATGGTCCATGGGAAAAAGAAGAATTCAGATATTCATGACAGAGGAACCTTGTACCTCTCCAAGAAGATTAATGCGATGGTGATATCGAGAGAAACCAAGAAGGCGATGAAGGCTGCGAAAGCTTTGAAGATTGAAAATCCTGCTTTCATGGTTATCTTGAGAGATTACCTCATGACTAACTCTGTAGTGTATGTGCCTCACGAATTTATGAAGGATCATCTGCTTGGATGTGGTAGCTCCATCAACCTCAGGGCCTCCCGTGACGAGCAATGGCCTGCGCGCTGCACTTATGACCCTAGGCGCCATACTATGAAGATACACAAAGGATTTGGTACATTTTGTAAGGAGAATAATTTGGAGGCAGGCGATGTGTGTGTGTTTGAGCTGATCAAGAATGAGGCTGCTGACTTCAAAGTTTCAGTGTTCCATGCCAGCGACTATGCGAGTGTAAACAGAGTGAGTGAGAGTAAAAGAGAGTTTGAGATGGAGAGAAAGGAGCTCTTGGTTTGCTGTGTTGTGGGTCTTTTGGGGCTGGTATCAGCTGCTACAGGCTTTGCTGCTGAGGCAACAAGAATCAAGGGTTCTCAGGTTCAGTTTGTCAATGCTACTCAATGCGAATATCCTCGGACTGCAGCTCTTGGACTTGGTTTTACTGCTGCAGTGTCTCTTATGGTAGCTCATATAATTATCAATGTTTCAACAGGGTGCATTTGTTGCAAGAGAATACCCCAACCTTCCAATTCTAACTGGACGATTGCCCTTATCTGCTTTGTTGTGTCCTGGTTCTCATTTGTCATAGCATTTCTTCTGCTGCTCACTGGTTCTGCACTCAATGATCAACATGGTGTAGAAAGCATGTACTTTGGCAGCTACTACTGTTATGTTGTAAAACCTGGAGTATTTGCTGGAGGTGCTGTCCTATCCCTTGCAAGTGTGATCCTAGGAATTTTCTACTACATCACCATAAGTTCAGCAAAGAAGAACAATGATAATCTGTGCGGCAATGGTGTTCAGGGGCCAGCAATAGCTATGGGACAACCCCAGTTTCCAGCACATAATCAAACTCAAGAACCTGTCTTTGTTCATGAAGACACTTATATGAGACGGCAGTTCACATGA
Protein Sequence:
- >mrna12617.1-v1.0-hybrid|Fragaria_vesca|B3|mrna12617.1-v1.0-hybrid
MSPAVLAGSSSSSCSAAFNRHQYKTPQITSPKSLAPLQCQKTSFQGLSLGEAKRGVSESFIAENISSATVRRGRLLSIVARTAGAAKTIEAEVDKPLGLTLGQKPGGVVTITAVEGGGNAAKAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDNVYFVVSRGGAEARATHICLDCGFIYTLSKPFDEQPDTYACPQCIAPKKRFARYDVNTGKPIGGGLPPIGVIIGLVAGLAGVGALLSLLTFGVVMTLSSLTVFVLKTPRRVVNLLSDSVANFFKVILSSTIENQKLDIPKKFALEYGEELSNGATVIVPAGDVWQVGLERAHKRIWFVDGWPEFAEHYSLTGGQFLVFSYQGDSIFHVRIFDFSCCEIEYPSVGQIIKHEEYVEHDVCVDQHVTRKRKSVAIAKKLKKAKLMVQRMPPSHDDPRRKKEYKEIFVGNMAAYTFPYMITRIAKERQKLIHAIQMFKLENPFFAVILQQGHLNKSYLYVPSAYAMRYMRGCPEYIKFEDSTANQWDIRCRFTTDTAVRIGRGCAEFFRENNLKTGDVLLYELINKKDVVLKFSVLRAAGNAVMVHGKKKNSDIHDRGTLYLSKKINAMVISRETKKAMKAAKALKIENPAFMVILRDYLMTNSVVYVPHEFMKDHLLGCGSSINLRASRDEQWPARCTYDPRRHTMKIHKGFGTFCKENNLEAGDVCVFELIKNEAADFKVSVFHASDYASVNRVSESKREFEMERKELLVCCVVGLLGLVSAATGFAAEATRIKGSQVQFVNATQCEYPRTAALGLGFTAAVSLMVAHIIINVSTGCICCKRIPQPSNSNWTIALICFVVSWFSFVIAFLLLLTGSALNDQHGVESMYFGSYYCYVVKPGVFAGGAVLSLASVILGIFYYITISSAKKNNDNLCGNGVQGPAIAMGQPQFPAHNQTQEPVFVHEDTYMRRQFT*