Information report for MDP0000550049
Gene Details
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Functional Annotation
- Refseq: XP_008343153.2 — auxin response factor 8 isoform X1
- Swissprot: Q9FGV1 — ARFH_ARATH; Auxin response factor 8
- TrEMBL: A0A498HAH8 — A0A498HAH8_MALDO; Auxin response factor
- STRING: XP_008343153.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cucumis melo: MELO3C025070P1
- Fragaria vesca: mrna31631.1-v1.0-hybrid
- Glycine max: Glyma.02G239600.5.p, Glyma.02G239600.4.p, Glyma.02G239600.3.p, Glyma.02G239600.2.p, Glyma.02G239600.1.p, Glyma.11G204200.2.p
- Juglans regia: WALNUT_00008048-RA
- Manihot esculenta: Manes.02G082500.1.p
- Populus trichocarpa: Potri.004G078200.2, Potri.004G078200.3, Potri.004G078200.1, Potri.004G078200.5, Potri.004G078200.4, Potri.017G141000.1, Potri.017G141000.2
- Prunus mume: XP_008227867.1
- Prunus persica: Prupe.3G011800.1.p
- Pyrus bretschneideri: Pbr012651.1, Pbr033588.1
- Ziziphus jujuba: XP_015879676.1
Sequences
CDS Sequence:
- >MDP0000550049|Malus_domestica|B3|MDP0000550049
ATGAAGCTTTCAGCATCAGGGCTGGGTCAGCAGGATCATGAAGGAGGGGGAGGAGGAGGAGTGGAAAAGAAGTGCTTGAATTCGGAGCTGTGGCATGCGTGCGCTGGGCCTCTGGTATCCCTGCCGACACGTGGGACTCGTGTGGTCTACTTTCCGCAGGGCCACAGCGACCAGGTTGCCGCCACTACCAACAAGCAAATTGATGCCCACCTACCAAACTACCCGAGCTTGCCSCCCCAGTTGATCTGTCAGCTCCATAATATCACCATGCATGCAGATGTGGAGACAGATGAAGTATATGCCCAAATGACATTGCAGCCTTTGACGCCGCAAGAACAAAAAGAAACATTTCTTCCAATGGAGTTGGGGCTTCCAAGCAAGCAACCCACAAACTACTTTTGCAAGACATTGACCGCAAGTGATACTAGTACACATGGTGGCTTCTCTGTTCCTCGTCGTGCTGCYGAGAAAGTTTTTCCTCCACTTGATTTTACGCTACAACCACCAGCTCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCATATTTTTCGAGGACAGCCGAAACGACATCTTCTTACTACAGGCTGGAGTGTGTTTGTTAGTGCCAAAAGACTTGTTGCTGGAGATTCTGTTGGTTGGGATGAGTCTACTGCAGGTGAGAGGCARCCAAGGGTATCATTATGGGAGATTGAGCCTTTGACAACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAACGTCCTTGGCATCCTGGGGCCTCATCTATGCATGATAATAGAGATGAATCTAATAGCTTAATGTGGCTAAGGGGGGGAGCTGTAGAGCAAGGTCTTCAGTCCATGAACTTTCAAAATGTTGGTATGTTTCCATGGATGCAACAGAGATTGGATTCGACATTGATTGGAAATGATCACAATCAGCAGTACCAGGCCATGTTGGCTGCTGGTTCGCAGAATCTAGGAAGTGGAGATCAGCTAAGACAACAGATGATGCACTTTCAGCAGCCTTTTCAGTATGTTCAGCAGTCGGGTAGCCACAATCCGATGCTGCAGTTACAACAGCAAGCAATTCAGCAGTCAATCCCTCATAATATCCTGCAGGGACAGCAACAAGTTTCAATGGAGAATATGCCTCAGCACCTTCTCCAGCAACAATTTAACAATCAAACAGATGAGCAGGCTCAGCAACACCAAAACGCCTATCAGGATGCACTCAAGGTTCAAAATGAACAACTCCATCAGAGTCAGCAAATGAATGTGTCATCTACGTCGTTCCTGAAAACRGACTTAAGTGATTCAAGCACAAAGTTCTCAGCATCTACTACTCCTAGACAGAACATGCTTGGTACACTGTGTCCTGATGGGAGCGGAAATCTTTTGAGCATGTCCAGAGCTGGTCATTCAATGCCAACTGAGCAGTCACCTCAGCAATCCTGGGCTCCAAAGTATGCACWTGGACAGGCCAATGCTTTTGCCAACTCAATGTCATTTCCACCATTTAATGAGAAAGACAATGCAGTTGAGCAAGAGAATTTAAATTCAGATACCCATAATCCTACTCTGTTTGGTGTTAATATTGAATCTTCTGGACTTCTATTCCCAACCAGTGCGCCCAGTTTTGCGACTTCCTCAAATGATGCTGACATTTCAATGCCTTTAGGGGACTCGGGACTTCAGAGATCTCTGTATGGTTGCATGCAAGACTCTTCTGAGTTGTTGCACAGTGCAGGGCAAGTTGATCCACCKACCCCCAACAATTGTACATTTGTCAAGGTTTATAAGTCAGGGTCAGTTGGCCGCTCACTGGACATATCCCGGTTCAGCAGCTATCATGAGCTGCGAGAAGAGCTGGGACAGATGTTTGGGATTGAGGGGAAGTTGGAGGATCGTCTTAGATCAGGCTGGCAGCTTGTATTCGTTGACAGGGAGGATGATGTGCTTCTCCTTGGAGACGACCCATGGGAGTAA
Protein Sequence:
- >MDP0000550049|Malus_domestica|B3|MDP0000550049
MKLSASGLGQQDHEGGGGGGVEKKCLNSELWHACAGPLVSLPTRGTRVVYFPQGHSDQVAATTNKQIDAHLPNYPSLPPQLICQLHNITMHADVETDEVYAQMTLQPLTPQEQKETFLPMELGLPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGASSMHDNRDESNSLMWLRGGAVEQGLQSMNFQNVGMFPWMQQRLDSTLIGNDHNQQYQAMLAAGSQNLGSGDQLRQQMMHFQQPFQYVQQSGSHNPMLQLQQQAIQQSIPHNILQGQQQVSMENMPQHLLQQQFNNQTDEQAQQHQNAYQDALKVQNEQLHQSQQMNVSSTSFLKTDLSDSSTKFSASTTPRQNMLGTLCPDGSGNLLSMSRAGHSMPTEQSPQQSWAPKYAXGQANAFANSMSFPPFNEKDNAVEQENLNSDTHNPTLFGVNIESSGLLFPTSAPSFATSSNDADISMPLGDSGLQRSLYGCMQDSSELLHSAGQVDPPTPNNCTFVKVYKSGSVGRSLDISRFSSYHELREELGQMFGIEGKLEDRLRSGWQLVFVDREDDVLLLGDDPWE*