Information report for MDP0000320006
Gene Details
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Functional Annotation
- Refseq: XP_008365112.2 — uncharacterized protein LOC103428773
- TrEMBL: A0A498JD23 — A0A498JD23_MALDO; Uncharacterized protein
- STRING: XP_008365112.1 — (Malus domestica)
- GO:0009788 — Biological Process — negative regulation of abscisic acid-activated signaling pathway
- GO:0016487 — Biological Process — farnesol metabolic process
- GO:0005774 — Cellular Component — vacuolar membrane
- GO:0005783 — Cellular Component — endoplasmic reticulum
- GO:0005886 — Cellular Component — plasma membrane
- GO:0003677 — Molecular Function — DNA binding
- GO:0047886 — Molecular Function — farnesol dehydrogenase activity
- GO:0050662 — Molecular Function — coenzyme binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Daucus carota: DCAR_019459
- Fragaria vesca: mrna09083.1-v1.0-hybrid, mrna09082.1-v1.0-hybrid
- Glycine max: Glyma.04G037800.1.p
- Gossypium arboreum: Cotton_A_28688_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A01G0971, Gh_D01G1022
- Lotus japonicus: Lj1g3v2584580.1, Lj1g3v1649030.1
- Prunus mume: XP_008220212.1, XP_008220213.1
- Prunus persica: Prupe.1G438000.1.p, Prupe.1G437900.1.p
- Pyrus bretschneideri: Pbr019600.1, Pbr019622.1, Pbr008717.1, Pbr008716.1
Sequences
CDS Sequence:
- >MDP0000320006|Malus_domestica|B3|MDP0000320006
ATGAAGATACTCGTCACCGGCGCCTCCGGTTACTTAGGCGGAAGATTATGCCACGCGCTACTGAAGCAAGGCCACTCCGTCCGCGCCCTCGTCCGCCCCACCAGCGACCTCTCCTCCCTTCCTCCACCGTCATCCACCGGTAMCGCTTCCCTCGAGCTTGTCTACGGCGACGTCACTGACTACGAATCCCTCCTCTCCGCCTTCTCCAACTGCGACGTCGTTTTCCACGCCGCCGCCGTCGTGGAGCCCTGGCTTCCCGACCCCTCCAAATTCTTCTCCGTCAACGTTGGGGGAWTGAAGAACGTGCTGCGAGCGGTCCGGGAGACGAAGACCGTACAGAAAATCATCTACACGTCGTCGTTTTTCGCGCTCGGATCAACCGACGGCGGCGTCGCTGACGAGACGCAGGTCCATCACGAGAAGTTCTTCTGCACGGAGTACGAGAGATCGAAAGCCGCCGCCGATAAAATCGCGCTGCGAGCCGCGCAGCAAGAGGAGCTGCCGTTGGTGCTGCTTTATCCCGGAGTCATCTACGGCCCCGGAAAACTCACAGCCGGCAACGTCGTCGCTCGGTTGATCGTCGAGCGGTTCAACGGCCGGTTGCCGGGGTACATTGGCTCCGGGAACGACAGGTATTCGTTTAGCCATGTGGACGACGTCGTAGAGGGCCATATCAGAGCAATGGCAAAAGGTCGAACAGGTGAGAGGTATCTGCTGACAGGCGAAAACGCATCGTTTAAGCACGTTTTCGATGTGGCGGCCGTGATCACACAAACCGGYAGGCCGAAATTTGGGATCCCATTGTGGCTGATCGAGGTGTACGGATGGGCGTCTGTTCTTTTCTCTCGGGTTACAGGGAAGCTTCCCCTGATTAGTCCTCCGACTGTTTATGTTCTGAGGCATCAGTGGGCGTATTCGTGCGAGAAGGCGAAGGCCGAGCTGGGTTACAGTCCTAGRGGATTGAAAGAAGGRTTGGGGGAGCAACTCCAACCTTCCCTTGACATCAACTGTCCGATCATCAATGACATTGTTGACAGCCAGGATGTACTTCCTCAACATGTTTCCATATCCACCACCGCTTATGTGCCCGCCAACACCAACCGTGGGGCAAATACGGGTCGGAAAGCCGTGGACTTTCCTCGTCTTCAAAATCCAATAGTACAATTCTCCGAGCGTGGCGCCAGCCTGAACCCAAATCGAATTGTCTTCCATATGAAGCGCGCGAAGGCCCGCACGGTGGAGAAGCAGCTCGTGGAGGTGAGGMGGTCCTCCCGGGTCGCAAATCTTCCGACCCCGGTTTACAAAGAAGTGGCTGTGGTGGATCGGGAGATGAGGCCCAGAAGGTATTCTACTAATAGACATAGGGATTTGTCAAACCGGGTTTATGCTTCCGATGAAGCCAGAGATGACGCCACTGCGAGAGCTGAGGCATTTGAGTCCGATTTGGGATCCGATTACCCGACCATGGTGAAACCGATGCTGCAATCCCATGTCACTGGTGGATTCTGGCTGGGTCTTCCGAAATATTTCTGCAGTAAGAACCTCCCGAAGCGTGATGATATTGTGATTTTGATAGATGAAGATGGGAACGAGTGCGAGGTTATATACTTGGCTGAGAAAAGAGGACTCAGTGGTGGATGGAGAGGGTTTGCAATTGATCATGATTTGGTKGATGGGGATGCATTGGTCTTTCAACTAATTCGGCCTAAAACGCTCAAGGTTYGGTTACAAGTTTCTTGA
Protein Sequence:
- >MDP0000320006|Malus_domestica|B3|MDP0000320006
MKILVTGASGYLGGRLCHALLKQGHSVRALVRPTSDLSSLPPPSSTGXASLELVYGDVTDYESLLSAFSNCDVVFHAAAVVEPWLPDPSKFFSVNVGGXKNVLRAVRETKTVQKIIYTSSFFALGSTDGGVADETQVHHEKFFCTEYERSKAAADKIALRAAQQEELPLVLLYPGVIYGPGKLTAGNVVARLIVERFNGRLPGYIGSGNDRYSFSHVDDVVEGHIRAMAKGRTGERYLLTGENASFKHVFDVAAVITQTGRPKFGIPLWLIEVYGWASVLFSRVTGKLPLISPPTVYVLRHQWAYSCEKAKAELGYSPRGLKEGLGEQLQPSLDINCPIINDIVDSQDVLPQHVSISTTAYVPANTNRGANTGRKAVDFPRLQNPIVQFSERGASLNPNRIVFHMKRAKARTVEKQLVEVRXSSRVANLPTPVYKEVAVVDREMRPRRYSTNRHRDLSNRVYASDEARDDATARAEAFESDLGSDYPTMVKPMLQSHVTGGFWLGLPKYFCSKNLPKRDDIVILIDEDGNECEVIYLAEKRGLSGGWRGFAIDHDLVDGDALVFQLIRPKTLKVXLQVS