Information report for MDP0000288808
Gene Details
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Functional Annotation
- Refseq: XP_008359085.2 — B3 domain-containing transcription factor NGA1
- Refseq: XP_008359143.2 — B3 domain-containing transcription factor NGA1
- Refseq: XP_008359205.2 — B3 domain-containing transcription factor NGA1
- Refseq: XP_008359274.2 — B3 domain-containing transcription factor NGA1
- Refseq: XP_017187959.2 — B3 domain-containing transcription factor NGA1
- TrEMBL: A0A498KPF4 — A0A498KPF4_MALDO; Uncharacterized protein
- STRING: XP_008359085.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna18594.1-v1.0-hybrid
- Manihot esculenta: MANES_05G015100, Manes.05G015100.1.p, MANES_01G238800
- Prunus avium: Pav_sc0001046.1_g520.1.mk
- Prunus mume: XP_016652261.1, XP_008244189.1, XP_008244188.1
- Prunus persica: PRUPE_2G201000, Prupe.2G201000.3.p, Prupe.2G201000.2.p, Prupe.2G201000.1.p
- Pyrus bretschneideri: Pbr025896.1, Pbr007784.1
- Rosa chinensis: RchiOBHm_Chr1g0361371
- Vitis vinifera: GSVIVT01027463001
- Ziziphus jujuba: XP_015888931.1, XP_015888930.1, XP_015888929.1
Sequences
CDS Sequence:
- >MDP0000288808|Malus_domestica|B3|MDP0000288808
ATGGACTTTATGCAAAGAGATCAAAAGGGGTATTCTGACAAAGAAGATCAAGATCAAGAACAAGAAGATCAAGAGGAAGAGGAGGATATAATCACCACAAGTAACAGCAATTATGGGTCCTCACCAAARTACAAAGGCATCCTTCTTCCTCCTCCTCCTCCGCACTACCACCAGCAGTACGGCCGGCAAAAGCCGTGGCTTGATGTTCAGAATCACGGCTCTCCGGAAGCCATCAACTTCACGGACTTATCACTAAACAAAGATCAGGTTTCTGATGGTGGTACGGACCAGAATTACTGGCCTCCTAATTCTGAAAGAGAGCACATGTTTGACAAGGTTGTGACGCCAAGCGATGTTGGGAAGCTCAACCGCCTGGTCATTCCGAAGCAGCATGCGGAGCGGTACTTCCCACTTGACTCCTCATCGAACGACAAGGGCTTGCTTTTGAATTTCCAAGACCGGACGGGAAAGCCGTGGCGGTTTAGGTACTCTTATTGGAATAGCAGCCAGAGCTATGTCATGACAAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTATCATTTGAGCGAGGGGTTGGGGAATYGGGGAAGGACAGATTGTACATTGACTGGAGGCGCCGTCCTCCCCCTCCTCTTCCGCCTCAACTACATCCTCATAACCATTATGGCGGAGGCAGGGTTTACTCGCTGCTGCAGSGGCCGCTGCCTTCGTCTGTGATGTCGTCTATGCCTCTTAGACACCACGAACATTTTCTTCACTCGAACAACAATGTTCATCATCCGTACCACCACCAGCATCACAACTATCAGCTCATGAATCAACAATATTTACCGCATCAGCTTCATCAATTGCAAGGTGGGGGGGATCAACATGTGATTCATCATCAATATCCAATGGTGATAGATTCGGTGCCTTTTTATCAACATGGTAATTATAAGAACAGTGCTACTAGTACCAGTAATAGTGCTAGTGCTAGTGTTGCTTCATCAGCTGGTAAGAAGCTTAGGCTTTTTGGTGTGAACATGGAATGCTCAAGTAGTCCAATTGAAGAGGATGATCATCACGAATGTCAGATATTGTCTTCAACAGCAATACCCTATCAACCTCATCTTCCATCGTCGACATCTTCACTGGCTTTTCCTCCGCTCGAATTCATTAGGCTGCCCAATACAACTGCAGCTAATCAGATTAGGCACCCTTTACAGGTAAGGCTAGGTGCAKAAAGCTCATTGATGTTAAAAAGGTTTATCGAACACTTGATGAATGATATCAACAGAATTTGTGGAGTGTTGTCTATGYAACCTGTCAAGATATGCTTAGCAKATTTCCATTGTTATAATATCAATCCCTCTCGTGTAACTAAACAAGATTGTGGTGCCGGCCACGAAAAATCTGGATTATGGTTGATTGTTTTCACAGCTGCAGTTACCCTCATTTGTTCGCAGCTGCTGTTAAGCTTCCTGATCAACTTCAACTTGGACAAGGGTCACTGGGCTGCTTATGAAAGCAAAAACCCTAAATTGTTGGGTAATTGCAAGGCAGTTGCAGACGAGTACATTGAATGCGAACCCATAATTATTCTAATTGATTTGATTCTGCACAAGACCAAAGCTTATACACATTTACTCTATAATGTCATCGACCCACAAGCTCCTTCTTTCCAGGAGTCTCTTTTTGGAAAGAAGCAAGGAAGAATGGGGCTTGTCCATGAGCTTCGCCTCKTTACTTTGGAGATTTCAAAAGATGGGTTGAGAATTTTGGCATTTCAGTTTCCTATTAATAAGAAAAAGATGTTCCGATTTCAGATGCTGATGGATATCGTCTTTGGAAATATCATGTTTCTTTCTACATTTTTACTTGCTATGAGGATTCTTTTCAGCACATTCCCTAGACCACTCAGCTTTGCAGTCGGATTCTTCTCRAAGCAACTCCAAGTGGATAGACGCGAATGGACGATGGTTGAAGACAGTCTTGCTGAG
Protein Sequence:
- >MDP0000288808|Malus_domestica|B3|MDP0000288808
MDFMQRDQKGYSDKEDQDQEQEDQEEEEDIITTSNSNYGSSPKYKGILLPPPPPHYHQQYGRQKPWLDVQNHGSPEAINFTDLSLNKDQVSDGGTDQNYWPPNSEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGVGEXGKDRLYIDWRRRPPPPLPPQLHPHNHYGGGRVYSLLQXPLPSSVMSSMPLRHHEHFLHSNNNVHHPYHHQHHNYQLMNQQYLPHQLHQLQGGGDQHVIHHQYPMVIDSVPFYQHGNYKNSATSTSNSASASVASSAGKKLRLFGVNMECSSSPIEEDDHHECQILSSTAIPYQPHLPSSTSSLAFPPLEFIRLPNTTAANQIRHPLQVRLGAXSSLMLKRFIEHLMNDINRICGVLSMXPVKICLAXFHCYNINPSRVTKQDCGAGHEKSGLWLIVFTAAVTLICSQLLLSFLINFNLDKGHWAAYESKNPKLLGNCKAVADEYIECEPIIILIDLILHKTKAYTHLLYNVIDPQAPSFQESLFGKKQGRMGLVHELRLXTLEISKDGLRILAFQFPINKKKMFRFQMLMDIVFGNIMFLSTFLLAMRILFSTFPRPLSFAVGFFSKQLQVDRREWTMVEDSLAE