Information report for MDP0000263654
Gene Details
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Functional Annotation
- Refseq: XP_008385749.2 — B3 domain-containing protein Os01g0234100-like isoform X2
- STRING: XP_008385747.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g013400m, orange1.1g012696m, orange1.1g014885m, orange1.1g011928m
- Gossypium arboreum: Cotton_A_21533_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A03G1673
- Manihot esculenta: Manes.07G082100.1.p, Manes.07G082100.3.p, Manes.07G082100.2.p, Manes.13G127300.1.p
- Populus trichocarpa: Potri.005G137600.3
- Prunus persica: Prupe.8G122500.1.p, Prupe.8G122500.3.p, Prupe.8G122500.2.p
- Pyrus bretschneideri: Pbr030439.1, Pbr005343.2
- Ziziphus jujuba: XP_015890124.1, XP_015890122.1, XP_015890123.1, XP_015890121.1
Sequences
CDS Sequence:
- >MDP0000263654|Malus_domestica|B3|MDP0000263654
ATGTGGAGCGGTGGCGGAGCTAGTGGTAGTTGCGGTGGCGATGGTGGCGGCGGTGGAATCTACTGGGGACGGAAGGAGGAGGTCTCTCATTCCAAAGGAATCGTTGTCATCTTCGCTTGGGTTTCGATTCACGAGAGGCACTTGCAGAATCACGTGGATTTGTACTCGTCTCTCGGTTGGAATTCCCTCGTTTGCCATTCCCATTTTCTCCATGCATTCTATCCCGAAAAGGCCATGTCGTTCGCCTTTGTTATTCTCAATGAGCTTGTTGAGAGTTTGGGTGCTCCATTTCTCATTTTGTGCTCTGATAAAGATGATCTGGCCCCTTATCACATTATCTGCAATTTCACTCACCGTTTACAAGAACTTGGAGGAGATGTCAAGCTTGTGAAATTGAATGGCTCCCCTCACCTAGGCAACACTTTGAAGAGTATAAATGTCTTGTTGGAATTGTCTGAAACCTTGTGGGCACCATCTTATCTTGGACAAATAGAAAATCATTATAAGTATTATCCAATACAGTATAGGTCTTCCGTTACTCACTTTCTTGAAAAGGCTGCTTTGGTTTTTTCTCAAAGAATTAAAGAACTTGAAGGTGACAATACTAGCATGGAAGGCATGCAAGATGAGATATCTGAACTAATATGTGATCTCCGGAAAGCAGCAGTTAACTCYAATCAGAGCCTTAGAAGAGTTGCAGTGGAGCCAAGCGACCACTTCTTCTTGCCAAGTTCAGCTGAGAATCAAAATAGAATTCACCTCCTCGTGGTCTCAAAAGCTTTCGTCGCTCAAGATTATGACTTCTGTTATGGGTTAGCCGTCAATGCAACAATGTTAGCCAGAATAGAGGCAAATGTTGGAGGTGAGGCGAAATCATTTCGCAATGTCTACGAGTATTTATGCATAGAAACTTGTCATTTCGACCTTCCCATTTCCCGAATGACAACTAGTGACAAGTCACGGTTATTCACTTGTTTTGGGCTCGGAGAAGCTATGAAGAATTTCAATCTGCCTGTGGCCACAGTCAAGCTGAGTGTTTGTCAAACGCCAATGGCCATGGCGGTGATGCAGGACTGCAGACACCCCCAAAACTTCACACTCGCCATGAACGTCAAGGAAGAAGAAGAAGAACTCTCCGACTCTGAGTATTTTCCAGAGGAAAAAGAAGACGACGAAGACCACGGCGAAGCAGAAAGCTTGACCGTTTCCCAGTTTCGTCTCCGCAGCCGCCCAAAATCCCTTCATTCACCTCCCCCTTTGGTAGGGGTAGAGCAGATGGAGCAGACATTGGAGACCAAGCAAAATGTGCTCAGCACTTGGAGACGTCCTACACGACCGACCCATATCACCAAGCGAAAAGTTCCTGGTCATCCTCAGAAGCATGGAGATGGAGGGTGTAAGCGGAAGAGAACCATTTTCGACTCTTTTAAGGATCATGAAATATCTTTTGTGAGAAACCAAGTTCAGGACATCCAGGCAAATCTTGGAGCTGACCCCGTCTTTGTCAAGTCTATGATACGTTCAAATGTTTCCTCTTGCTTTTGTTTGACACTGCCTAAGCAATTCTGCCAGTTGTATTTGCCATTGCATGATGCAACATTAACCCTCGAAGTTGAAGGTGGGGAAAAATACAGAGTGACGTTTCTTGGGGAAAGGAGGATAGTCAGTGCAGGATGGCAAAAGTTTTCTACTGCAAACAAGTTACTTGTCGGCAACCTTTTAGTTTTCCGTTTGGTCAGGCCTTTGAAGTTCAAGAAAAAACATCTAATGACTCCTCCACGAGATGTTTCCCAAGGCAACATTCAAAAGAAAAGTTCGAAATTAGGTACTAATCCGGAGCTTGTTGCCAACCAATCTGAGGATGACAATGAGGACTTTGCCTCCAACTTAGCGGCAGATATTACATTTCGAGGACCAGCTGCTGATTTTGAAGATGTTAGAATGATTGATAATTTCACCATTCTTGTGAATGGTGTGACTATAGATACTCAACTCTCCGCACAGGTCAGGACTATCTATTATGATCTATGCTGCTCACAAGGCTCATTTTTGCATGACAATCTCCTCAAAAGTATTGACAGTAAGTTGGCTGCTGAAATAATAACTGAAACCACCAACATCGCTAATGCCATTAGAGCTTGCAAGCTGCCCCCCTCTCGTGCTGATTATGTAATGCAGGAGAAGACTTTACACGCCTTTGAGCTGTTGGGTATGGATGTTGGATTTCTGCGCGCGAGACTGAAGCAGTGTCTGAGCATTGCCTCCAAATACGAAGTGGCCGCAGAATCAAAGAGGTATTTAGAAGGTAAAGTTGAGCAAGTTTGTACGAGGGAGAAGATTAGAGATCTTGATTCAAAGCTTTCGGAGTTGAAAGAGACCATGGAAAATGTAGGGATTTCACATACTTGA
Protein Sequence:
- >MDP0000263654|Malus_domestica|B3|MDP0000263654
MWSGGGASGSCGGDGGGGGIYWGRKEEVSHSKGIVVIFAWVSIHERHLQNHVDLYSSLGWNSLVCHSHFLHAFYPEKAMSFAFVILNELVESLGAPFLILCSDKDDLAPYHIICNFTHRLQELGGDVKLVKLNGSPHLGNTLKSINVLLELSETLWAPSYLGQIENHYKYYPIQYRSSVTHFLEKAALVFSQRIKELEGDNTSMEGMQDEISELICDLRKAAVNSNQSLRRVAVEPSDHFFLPSSAENQNRIHLLVVSKAFVAQDYDFCYGLAVNATMLARIEANVGGEAKSFRNVYEYLCIETCHFDLPISRMTTSDKSRLFTCFGLGEAMKNFNLPVATVKLSVCQTPMAMAVMQDCRHPQNFTLAMNVKEEEEELSDSEYFPEEKEDDEDHGEAESLTVSQFRLRSRPKSLHSPPPLVGVEQMEQTLETKQNVLSTWRRPTRPTHITKRKVPGHPQKHGDGGCKRKRTIFDSFKDHEISFVRNQVQDIQANLGADPVFVKSMIRSNVSSCFCLTLPKQFCQLYLPLHDATLTLEVEGGEKYRVTFLGERRIVSAGWQKFSTANKLLVGNLLVFRLVRPLKFKKKHLMTPPRDVSQGNIQKKSSKLGTNPELVANQSEDDNEDFASNLAADITFRGPAADFEDVRMIDNFTILVNGVTIDTQLSAQVRTIYYDLCCSQGSFLHDNLLKSIDSKLAAEIITETTNIANAIRACKLPPSRADYVMQEKTLHAFELLGMDVGFLRARLKQCLSIASKYEVAAESKRYLEGKVEQVCTREKIRDLDSKLSELKETMENVGISHT