Information report for MDP0000236750
Gene Details
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Functional Annotation
- Refseq: XP_017183067.1 — B3 domain-containing transcription factor VRN1-like
- TrEMBL: A0A498KNH5 — A0A498KNH5_MALDO; Uncharacterized protein
- STRING: XP_008354683.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna29444.1-v1.0-hybrid, mrna14412.1-v1.0-hybrid, mrna28757.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D03G1685, Gh_A02G1527
- Juglans regia: WALNUT_00011203-RA
- Manihot esculenta: Manes.07G115200.1.p
- Prunus mume: XP_008241865.1, XP_008240722.1, XP_016651482.1
- Prunus persica: Prupe.7G044800.1.p, Prupe.7G143300.1.p, Prupe.7G039600.1.p, Prupe.7G143900.4.p, Prupe.7G143900.3.p, Prupe.7G143900.1.p, Prupe.7G143900.2.p
- Pyrus bretschneideri: Pbr025045.1, Pbr025044.1, Pbr025043.1
Sequences
CDS Sequence:
- >MDP0000236750|Malus_domestica|B3|MDP0000236750
ATGCCGATGAGCAGTCCAAATCATAATGTCCCTTCGTTAATTTATGTCACATGTAGTCTTGATATTGTAGATAACTATAGATACATGGTCATATTACTCAGAGCAAGTTATCCATTGCAGAGACTTCCAGAGAGTGCTGTGGTTGTGTATGGAGATTATCTAGGAGACAACGTAGTTCTCAAGGTTCCGAATGGAGAAAAATGGCCGATAGGATTGACTAGCCGTGACGGCAAGGTTTGGTTAAACAAGGGCTGGTCAAAATTCGCAGAGTTTTACTCACTAGACCATGGGAACTTACTGATATTCAGCTTTGAAGGAGATCATTCTCACTTCCACGTGCGGATTTTCTCGAGGAGTTGTTTAGAGAAAGACTTCGGTTCATTTTTTAATGTTGAAGACAACTTAAGTGGTGAGACAGATAATGTTGGTTCATCCGAGTCACCTCTAATGGGGTCGTGTAGCAAGAGAAATGGTAAAGGCCCTGCRTTTCCGCTGAATGCTCCTCCAAGCTTCTTCAAGGTTGTCCTGGATGATACACTTCGAGATGGGARGATCAAAATTCCACCGATAGGTTCAATGAAATATGAAGATTTTATCGGAGACAAAATGTTCCTTGAAGTTCCAAATGGATTAGTATGGCCAGTAGAACTGTCAAGGCGTGATTGTGAGATTTGGTTACGAAGGGGCTGGCTGAAGTTTGCTCGATTTTACTTCCTCGAGCTGGGGTGCTTATTGTTGTTCACCTACAAAGGGGTCTATTCCCATTTCCAGGTTCGCATTTTTCGAAGGAATACTTTAGAGATGGACTACTTCAATTTAAGCGATGAAGATGAAACCGATTCCAATTCAAGTGGGGAAATTGAATGTCAAAGAATGAAGCATGACAAGGAAAGGAGGACTCACGGTGGTGATGGAGGCATGTCTGCTGCACACAGATCACCAAAGGTCCTTTCGAGAACTGCTCAGAGTGAATTGGAAGATAAAACTGAAAGAGCCTTTGCGAAAGCTAGAAGTTTCAAATCTCGCAATCCATTTGTTGTGATCAGAATGCGACCATCATACATTTCAACTCACTTGAAATTACCTATATACTTTGCCCAGGAACATATTTGTGAAAGCGGCGAACGCAAGGTGACTCTAAAGATTTCAGATATGAGATCTTGGTCTGTTAAGTGCATTATCCAGAACCACTCAGCTATGTGCCCGGCAGCGGCAATAACCTTGTTGTTTGTTGAATTCTCTGCAACATTAGAACTACCTGCAATGGCTTCTCTTCTTCCGGAAACTGATCGTGCACGGCCAACATTTTCGGCTACCACTCCACATTTTTTCAAGATCATTCCGAATGAAGCTTCTAGATACACAAAACTTAGGATTCCGGAGAAATTTGTGAATAAATATGGAGAAAATATATCAAATCCAATACTTCTTAAGCTTCCAAGTGGTGTAGAATGGGAAATCCAAGTAAGAACTTGTAATGGTGACATTTGGTTTGACAAGGGTTGGCCGGAATTCTCTGAGTTTTACTCTCTTGATTATGGAGACTCTCTAGTTTTCCGCTACGAAGGGAATTCCAAATTTCATGTTTGCATATTTGATAGAAGTGCCACGGAGATTGAGTATCCGTTACCATTTCCGGAGGTGGAAGAAAGTGATGAAGATGATGATGAATCCTTCAAGGTTTTGGAGGATTTTCCACCCTGCCCAAGAACAAGACAGAAATCTCCGTTGCCATGTCCTCTGCCTCGCATGAAAAAGAGAATAAGCACTTCTTCAAGTAAAAAATTCGGAAACAAAAGCTCTTCAAGGAGGCATCCATTGACCAAAAATGAAAAATCTATAGCTCTTCAGAGATGCATTGATTTCAAATCTGAAAAGCCTCACTTCAAGGTTGTGATGCAGCCCTCCTACATATTCCATAATTTGATTTTGCCTTCGGAGTTTGCCAAGAGGCATCTTATGCAGCAGCCAACTGGTAGTGCCATCCTTTGTGTTCCGGATGGAGGAACTTGGCGTGTTAAATTCACATATGCAAACCAAATATCTCGGTTCTTGTGTGGTTGGCTGGCGTTTGTAGGAGATAATGATTTGAGAGTCGGTGATGTGTGTGTCTTTATCTTGATTAAGGACATTCCGCTCTCGTTTGAAGTTGTCTTTTACCGTGGCAAGTGCAAAATGGGGAAGATTAATGGCCGGCATGTTAGTCAGAGGCCTTGCACTTCATCTTTGAGTGCTTCTGAAGTTGCCAACATGTCAAAGATTTCTAATCAGGTTACCCAAAGGCCTTCATGTTTGAAGGCTTCAAGGGTTCTTGAAGCTGCTAACAAGTTCATCACAAAAAATCCTTTCTTTAGAGCCACTGTGCGGCCACCATCCAAGCTAATGCATGTACCAGCCGAGTTTGCCAAGAGATTAAAATTACAAAAGAAGCAAATTGCAGCTCTTCGGGTCGGAGAGCAATTGTGGCCTGTTAATATAATTGGTTACAACAACGAGGGAAGCAGACATTCGCACATTTCTGGTGGGTGGCGTGTATTTGCAGAGGAAAATCGTTTGAGAGAAGGAGATGTATGCACATTTGAGCTGGTCGAGATAAATGACATTGTGCTGAAAGTCATACAATTTGGGCTATGGGTTTTCCAATTACCCACCAAATCTTCCCAAAATTACTTTAAAATCTCCGATTGTAAGCGATCGATAGGAAGATTCGGACTGGTGGGTTGTAATCGTTCGATGAAGAGAGCATCATTGGGGGACGATTCGATGGCGGCGGCGAGTTCAACGGATGTGAAGATGAAGAGGATTAAGGTGGAGGAAGAGGAGGAGAAGATGGTGATTGACTGCGTTGACCAGGATAAGCTGAAAAGGGCAGGGTTTTCGAATCTGGACGACAATCTGATCTTCGAGGTGTTCAAGCACGTGGACACGCGGACGTTGGGGATGGCATCGTGTGTGAGCAAGCAGTGGCACAAGATGGCGGAGTATGAGCGGCTCTGGGAGCTGATATGTCCAGGCACTTCTTAG
Protein Sequence:
- >MDP0000236750|Malus_domestica|B3|MDP0000236750
MPMSSPNHNVPSLIYVTCSLDIVDNYRYMVILLRASYPLQRLPESAVVVYGDYLGDNVVLKVPNGEKWPIGLTSRDGKVWLNKGWSKFAEFYSLDHGNLLIFSFEGDHSHFHVRIFSRSCLEKDFGSFFNVEDNLSGETDNVGSSESPLMGSCSKRNGKGPAFPLNAPPSFFKVVLDDTLRDGXIKIPPIGSMKYEDFIGDKMFLEVPNGLVWPVELSRRDCEIWLRRGWLKFARFYFLELGCLLLFTYKGVYSHFQVRIFRRNTLEMDYFNLSDEDETDSNSSGEIECQRMKHDKERRTHGGDGGMSAAHRSPKVLSRTAQSELEDKTERAFAKARSFKSRNPFVVIRMRPSYISTHLKLPIYFAQEHICESGERKVTLKISDMRSWSVKCIIQNHSAMCPAAAITLLFVEFSATLELPAMASLLPETDRARPTFSATTPHFFKIIPNEASRYTKLRIPEKFVNKYGENISNPILLKLPSGVEWEIQVRTCNGDIWFDKGWPEFSEFYSLDYGDSLVFRYEGNSKFHVCIFDRSATEIEYPLPFPEVEESDEDDDESFKVLEDFPPCPRTRQKSPLPCPLPRMKKRISTSSSKKFGNKSSSRRHPLTKNEKSIALQRCIDFKSEKPHFKVVMQPSYIFHNLILPSEFAKRHLMQQPTGSAILCVPDGGTWRVKFTYANQISRFLCGWLAFVGDNDLRVGDVCVFILIKDIPLSFEVVFYRGKCKMGKINGRHVSQRPCTSSLSASEVANMSKISNQVTQRPSCLKASRVLEAANKFITKNPFFRATVRPPSKLMHVPAEFAKRLKLQKKQIAALRVGEQLWPVNIIGYNNEGSRHSHISGGWRVFAEENRLREGDVCTFELVEINDIVLKVIQFGLWVFQLPTKSSQNYFKISDCKRSIGRFGLVGCNRSMKRASLGDDSMAAASSTDVKMKRIKVEEEEEKMVIDCVDQDKLKRAGFSNLDDNLIFEVFKHVDTRTLGMASCVSKQWHKMAEYERLWELICPGTS