Information report for MDP0000125949
Gene Details
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Functional Annotation
- Refseq: XP_028953967.1 — B3 domain-containing protein LOC_Os12g40080-like
- TrEMBL: A0A498HHW4 — A0A498HHW4_MALDO; Uncharacterized protein
- STRING: XP_008374002.1 — (Malus domestica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna29444.1-v1.0-hybrid, mrna29445.1-v1.0-hybrid, mrna14412.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_34095_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A12G0629, Gh_D12G0646
- Prunus mume: XP_008243867.2, XP_016651550.1
- Prunus persica: Prupe.3G083400.1.p, Prupe.7G143900.4.p, Prupe.7G143900.3.p, Prupe.7G143900.1.p, Prupe.7G143900.2.p, Prupe.7G039600.1.p, Prupe.7G143700.1.p, Prupe.7G143600.1.p
- Pyrus bretschneideri: Pbr019198.1, Pbr005640.1, Pbr005643.1, Pbr030271.1, Pbr019385.1
Sequences
CDS Sequence:
- >MDP0000125949|Malus_domestica|B3|MDP0000125949
ATGGCTTCTTTTCACCGGAAAATTCATGACTTCTCTTCAAAAACACATCTTAAAGCTCCCCATTTCCTAGTAGTTATTCCGAAGTCTATTTGTACACAGACCAAACTTAGGATTCCAAACAAATTTTTTAGGAAATATGGAGATGATCTTTCGAATCCAGTATTTCTTAAGCTTCCAACTGGTTCAGAGTGGAAAATAGAACTCAGAATATGGGAGGGTGAGGTCTGGTTCGGCGAGGGTTGGCCAAAGTTCTCGAAGTTTTGCTCTCTAGACTGCTGTCATTCGTTAGTTTTCGGATATGAAGGGAATTCAACATTCCGCGTTAGTGTATTTGACAAGGATTTCACAGAGATCAACTATCCATTGACAATGCCCGAGATGGAAGAAACCGATGAAGATGATGATTCCGACAATAGTTCTTGGGATGATGATGACGACTCTGATTGTGTTGAAGTCTTGGACAACATCATGTCCCGCTCAAGAAAAACAAGGGACAAATATCCATTGTCATGTCCTCAGCCTCGTAAGAAGCACAGAACAAGTTCAACAGCTGAGTTTGCATCCAAAAGACACGGTGAAGGCACGTCCAGCACTCCAAAACGAGCTCAAACAGTTCTTGGGAGGATGCATGCGTCGAATGCAAGAGGAAAAGCTGCTGTAGCTCTTCGGAGAGCTACAGCTTTCAAATCTGACAACCCTTCTTTCATAGTTCCCATGAAGYGCACTTATATCAATGGATATTCTGTGTGGCTGCCTTCAAAATTGTGTATCCACATGAGACGTCTCGGTAAGCATCCTGGTGCCATTACCCTTCGGGTTTTGGATGGGGGAACTTGGTCTGTTGAAATGAAATGTGAAAAGGCAACCAGACCAAAACTCAGACTGCAGTATGGCTGGACTGAATTTGTAAGAGGCAATAATTTGGAAGTTGGTGATGTGTGTGTACTTGTGTTGATAGATGACACTAAACTTGAGTTTGAAGTTGTCATTTTTCGCGCCACAGAAACTGCACATACATTCTCACCACCAGATGTTGACGGGGAACAAACAATGTCCCAAATGGAAGAAACTGATGAAGATGATGATTCCATTGAAATCTTGGACRATTTYCCAASATGCYCGAAAACAAAGAAGAAATCACCRAYAGCACCACAGCCTCACAAGAAAAACAGAACATGTTCAGTTAGCACAGCAGAAAAYCGCATAAAGAAATTTGGTGGCTCGTCTTTGACTRAAAAAATAATGAACCGAAGAACTCTTCAATATTTGGGAGCCAAGTTTACCAAGGAACACTTTCTTAAGTGGAATTATCATCAAGTAATCCTTCGTGTTTCGGATGGAAGAACTTGGCCTGTCAAATTAAGCAAACGTCAGAAAAACATGGTCCGACTCCAGAATGGTTGGATTACATTTGTGCAAGACAATCATTTGGAAATTGGTGATGTGTGTGTATTTGCGTTGATTAACAACATCAAAGGTTTAATGGATGTTGTTATTTTCCGCACTACAGAAGCTGCACGTTGGAACCTGTCACAAGACGTTGATGGTGAAAAAACAATGTCCGAAACTGAAGAAACTGATGAAGATGATGGTTGTGTTGAAATCTTGGACGATTCTCCACCATGCCTGAAAACAAAGAAAAAATCACCAATTGCAACACAGCCTCACAAGAAAAACAGAGCAGGTTCCATTAGCACTTCAGAAAACCACATGAAGAAGTTTGGTGGCTCGTCTTGTACTAAAGAATTAGTAAAACGAAGACCTAATCAGGTTCCTAGGATGATGAATCCACTTACAGAAAGCGGAACAAATAGAGCTCTTCAGAGAGCAAGGGCTTTCAAATCTGAATACCCTTGTTGCATGGTTGTTATGCGTCCCTCGTATATCCAGGCAAATACTTTGAATTTGGAAGCTAAGTTTGCCCRGGAACATCTTCTAAACAGGACTCATGATAATGTGATTCTTCGTGTTTCGGGTGGAAGAACTTGGCCTGTCAAATTACACCAATATAGCAAAACTGTACTGAAATTCCAGAGTGGCTGGATGACATTTGTGCAAGACAATGGTCTGGAAATCGGTGATTCATTTTCCGCGGTAGAGAAACYGCTGATTGCACCTTTTCACCRGGTGAGCAAGTTTTCTGTTGGTTGTGAGTTTCTTTCTGCTCCATCAGGTCTGTCATCTGCATAA
Protein Sequence:
- >MDP0000125949|Malus_domestica|B3|MDP0000125949
MASFHRKIHDFSSKTHLKAPHFLVVIPKSICTQTKLRIPNKFFRKYGDDLSNPVFLKLPTGSEWKIELRIWEGEVWFGEGWPKFSKFCSLDCCHSLVFGYEGNSTFRVSVFDKDFTEINYPLTMPEMEETDEDDDSDNSSWDDDDDSDCVEVLDNIMSRSRKTRDKYPLSCPQPRKKHRTSSTAEFASKRHGEGTSSTPKRAQTVLGRMHASNARGKAAVALRRATAFKSDNPSFIVPMKXTYINGYSVWLPSKLCIHMRRLGKHPGAITLRVLDGGTWSVEMKCEKATRPKLRLQYGWTEFVRGNNLEVGDVCVLVLIDDTKLEFEVVIFRATETAHTFSPPDVDGEQTMSQMEETDEDDDSIEILDXFPXCXKTKKKSPXAPQPHKKNRTCSVSTAENRIKKFGGSSLTXKIMNRRTLQYLGAKFTKEHFLKWNYHQVILRVSDGRTWPVKLSKRQKNMVRLQNGWITFVQDNHLEIGDVCVFALINNIKGLMDVVIFRTTEAARWNLSQDVDGEKTMSETEETDEDDGCVEILDDSPPCLKTKKKSPIATQPHKKNRAGSISTSENHMKKFGGSSCTKELVKRRPNQVPRMMNPLTESGTNRALQRARAFKSEYPCCMVVMRPSYIQANTLNLEAKFAXEHLLNRTHDNVILRVSGGRTWPVKLHQYSKTVLKFQSGWMTFVQDNGLEIGDSFSAVEKXLIAPFHXVSKFSVGCEFLSAPSGLSSA