Information report for Lus10032315
Gene Details
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Functional Annotation
- STRING: Lus10032315 — (Linum usitatissimum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g036935m
- Gossypium arboreum: Cotton_A_00196_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A01G0064
- Juglans regia: WALNUT_00013091-RA
- Manihot esculenta: Manes.12G155800.1.p
- Populus trichocarpa: Potri.018G140700.1, Potri.009G103300.2, Potri.009G103300.1
- Prunus mume: XP_008236526.1
- Prunus persica: Prupe.8G122800.1.p, Prupe.8G122800.4.p, Prupe.8G122800.3.p, Prupe.8G122800.2.p
Sequences
CDS Sequence:
- >Lus10032315|Linum_usitatissimum|B3|Lus10032315
ATGGATTTGTTTGATAGGATCGTGAAATATGCTGCCTCTCGTGGTGTTCAACACATATGCTTGCGTGGTTATTATAGGCCTTATATTGAGATAGCCATTTCAGGTATGATCTGCAGTTGCTATCGATCTCTTAAGGCTCTGGAATTAGAAAGCCTACGTTTAGACGATACAGTGGTTGTTGGATTGTTTTCTGGTTTACAACAACTTGAATCTCTTACTTTGAGCAACTACAAGTTCAACTTCAACGCGTTCGATAGTGATCATGATGGTCTTGATAATCTTTCCAAATTGAAAAACCTAAAGCTGATACGTTGCCATCCTATCAATAATTGTTCACCTAGTATTCTTAAAGTTCATGCAGCCAAACTTCTATACTTGGAGATACGTCAGACATGGTATGACAGTACTGAAATTGTCACACCTAAGCTCCAATCTTTGCGTATTGAGTTTCGGTCTTTGCATCTGTGTGCTACCAGACTTCTCCAAGTCAAATCTTCCCTCGATCATGCAGACATTGACTTATTGTATATGAGGCTTCTGTTTTGTGAGACCTCTAGTGACAATGATTCCGAGGAGAAACTGCTGCTGCTCAAGCAGTGCATAAGCTTGTTCAATGTATTGGCTAATGTACAGTCTCTCAATTTGCGAATTCGACCCTTACAGGTATGTTACCAGTGGTTGATCCAGACTTGTGACATCGAATCTCGGCTCGTGGATCTTAGAACGTACCACATCAACTCCTTCGTTATTTTCTCGGAGGATCTCGTAAGGAAGATAAGCAATCTACGGTTGAGAAGTGATCGCAATGGTCTCTTAGCCTTAGTGTGCCACCGCCGTCCGCCGCCACCTGTTTGTCACTCACTCCCTCCAAATCATTGTTTTGAAAAATTCCACCAATCCTTCCCTCCACCGCCAAATTCCAAACTTCTTACCGCCAAAAAAGCTCTATACGAAAGTAAAGCTTGGAGCTTTTCTCTACCGTTGTTCTGTTTCTGCCGCAGGATATCCAAGAAGGGGGGAAGACACGTCACGAATGGTGAAGAGCAACGATGCTTTCTCCTTCCAAAAGCAGCTGTATACTATCTTTATCCAAAGAAATCCTTCTTAGGGGTTTGGCCGTTTGGGAGAATGTGGGGAAAGGCGATTTTTGATTTGATAATTCTAACTCTGGGTAGCTTTGTAACAATTGATTTGAAGGGAAGTGGTTCTCCAATAATCACAAGTTGTCCCTTACCCTTTGTGCAGATCCACAATGTGAGGCAAAGTCCTCGCCTTCTGCAAACGGGCAGCATTAAGCAAGAACTCGATTCTGGAGACGCAACTCCCAACATCATTGGCAAGGAGAAGGATGATTTGTCCACTGATACTGATATGTTGGTTTCTCCTCTTCTTCGAAATCAGATGCGTCTTGAGAAAGGGTTTGGGGCCAAGCATTTGCCTGATGAGGACACAATGATCGACTTGGAAGATGAGGATGGCAATATTCTTTCCGCGAGATATCTAGTTCGTAAACAAGGACTTAGTGGTGGATGGAAAGCCTTTGCCACGGATCACAAGTTAGTAGCAGGAGATGCTCTGGTGCTTCAGTTAGTTGAGCCAACCAAGTTCAAGATCTACATTGTTAGGGGAAGAAGCTCAGATAAAATGGATGTTGATTCTGGCCTTCTGCAAATGGACAGTGATAAGAAAAAACTGAAATCTGGTTTATGGTTTCTAGTTCATGCAGAGAATCTCTCCAAAGGTTACAAAAGAAGTAACTTGGGAACTAATCATCTGCTGACTAACAACAACTCCGAACGGCACGAGTCTAACGATGGACCAGAAGGCAGTTTCAGGTTCAGCATCTCAGATGGCATACGGATGTGTGAATCTACCACTATCGATTTCAAGCAAGTGAAAAGCTTTGACGACTTTGACATTGTGGTCAACGGCTTAGTGATAAACTGCGAGCTCTCCAGACACCTTCAGCTCAAGTACTATCAACTATGCAACAGCCAGAAGTTGTTTCTCCACCAACACCTTCTCAGCGGACTCAACTGTAAGCTGATCGTCGGAGTCATCGCAGAGACCATAAGCATTGCTGACGAAATCAGAGCTTCAGATTTTACACAACAGAAGAAGGACGAATTCGCTACATGGGAGAACACTTTGGTAGCGTTTGAGAAGTTGGGAATGAATGTTGAGTTCATACTCGCCAGGTTGAGGCAGCTCATGGGTCTTTGTGACGATGCGAACCGGCGCAAGAGACTGAGAACTGAGAGGATCCGAGTAGAAGAGGAGGTGAAGGTTTTGAAGGCGAAACTTGAGGAATCGGTCGAAAGGATCAAAAGAATAGATGGAGAAATGGAAGTAGATCATGAGGTGAAGTTCAGAGAATTGGCTAAAGCTCCATGGTCACTGTGA
Protein Sequence:
- >Lus10032315|Linum_usitatissimum|B3|Lus10032315
MDLFDRIVKYAASRGVQHICLRGYYRPYIEIAISGMICSCYRSLKALELESLRLDDTVVVGLFSGLQQLESLTLSNYKFNFNAFDSDHDGLDNLSKLKNLKLIRCHPINNCSPSILKVHAAKLLYLEIRQTWYDSTEIVTPKLQSLRIEFRSLHLCATRLLQVKSSLDHADIDLLYMRLLFCETSSDNDSEEKLLLLKQCISLFNVLANVQSLNLRIRPLQVCYQWLIQTCDIESRLVDLRTYHINSFVIFSEDLVRKISNLRLRSDRNGLLALVCHRRPPPPVCHSLPPNHCFEKFHQSFPPPPNSKLLTAKKALYESKAWSFSLPLFCFCRRISKKGGRHVTNGEEQRCFLLPKAAVYYLYPKKSFLGVWPFGRMWGKAIFDLIILTLGSFVTIDLKGSGSPIITSCPLPFVQIHNVRQSPRLLQTGSIKQELDSGDATPNIIGKEKDDLSTDTDMLVSPLLRNQMRLEKGFGAKHLPDEDTMIDLEDEDGNILSARYLVRKQGLSGGWKAFATDHKLVAGDALVLQLVEPTKFKIYIVRGRSSDKMDVDSGLLQMDSDKKKLKSGLWFLVHAENLSKGYKRSNLGTNHLLTNNNSERHESNDGPEGSFRFSISDGIRMCESTTIDFKQVKSFDDFDIVVNGLVINCELSRHLQLKYYQLCNSQKLFLHQHLLSGLNCKLIVGVIAETISIADEIRASDFTQQKKDEFATWENTLVAFEKLGMNVEFILARLRQLMGLCDDANRRKRLRTERIRVEEEVKVLKAKLEESVERIKRIDGEMEVDHEVKFRELAKAPWSL*