Gene Details:

  • Gene ID: Lus10025533
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Linum usitatissimum
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_011026357.1  — PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial
  • Swissprot:  Q9M9X9  — PPR18_ARATH; Pentatricopeptide repeat-containing protein At1g06710, mitochondrial
  • TrEMBL:  A0A2K1ZTA7  — A0A2K1ZTA7_POPTR; Uncharacterized protein
  • TrEMBL:  A0A385JI99  — A0A385JI99_POPTO; Tetratricopeptide repeat-like superfamily protein
  • STRING:  Lus10025533  — (Linum usitatissimum)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding
  • GO:0005515  — Molecular Function — protein binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Lus10025533|Linum_usitatissimum|B3|Lus10025533
    ATGTCAGGTTTAGGGTATGCAATGGATGGTTTTACTTTGGGATGTTTTGCTTGTTCTCTTTGTAAAGCTGGGAAATGGAGAGAAGCATTGAAGTTAATTGAGGATGAGGAATTCAAACCTGATACTGTGCTTTTTACCAACATGATATCCGGATTGTGTGAAGCCTCGCTCTTTGACGTAGCTATGGATTTCTTAACAAGAATGCGAGTTTATTCTTGTATTCCTAATGTTCTGACTTATAGGATTTTGCTCTGTGGGTGTTTGAGAAAGAAACAGCTTGGTAGATGTAAAAGAATTTTGAATATGATGATTACAGAAGGATGCTACCCAAGTCCAGCCATTTTTAACTCTTTAGTTAATGCTTATTGCAAATTGAGGGATTATGCTTACGCTTATAAACTTATTAAGAAAATGATGGAATGTGGGTGCCAGCCGGGTTACATAGTCTACAACATATTTATTGGTGGTGTTTGTGGAAATCAGGAGTTGCCTGAGGCGAGTGCCCTTGAATTGGCTGAAAAAGCATATCGGGAAATGCTCGATGCGGGAGTCACATTGAATAAGGTCAACGTTAGCAACCTTGCATGGTGTCTTTGTGGTGCTGGAAAATTCGAGGAGGCATATTGTCTCATTAGTGAAATGATGAGCAAGGGCTTTATACCAGATACCAGTACATATTCCCAGGTCATTACTTGTCTCTGTAATTCGACCAAAGTAGAAAAGGCCTTTCTATTATTTCAAGAAATGAGGAAGAATGGAATTCTGCCAGATGTGTACACATATACGCAATTGATCGACAGTTTTTGTAAGGTAGGTTTACTAAAACAGGCTCGCAGGTGGTTTGATGAAATGGAGGAAAATGGATGTGCCCCTAATGTAGTGACTTACACAGCACTTATACATGCTTACCTTAAAGCAAGGAAGGTGTCCGATGCAAACGAAATTTTCGAGCTGATGTTGTCCAAGGGCTCAGTTCCTAATGTCGTTACATATACAGCACTGATCGATGGATATTGTAAAGCCAGAGAGATTGAGAAGGCTTGCAAAATATATGCAAGAATGAAACAGGAAAATGTTGAAAATTCAGAAGTAGATATGTATTTTGGGGTGGTTGATACAGAGTCCGAGGAACCAAATCATTTTACGTATGGAGCTTTGGTTGACGGCTTATGCAAAGCTCATAAGGTGAAAGAGGCACATGAGTTATTAGAAGCAATGTCGGCAAGTGGTTGTCAGCCGAATCATATCATATATGATGCCCTTTTAGATGGATGTTGCAAGGTCGGTAAGCTAGATGAGGCGCAAGAGGTGTTTACTCAGATGATAGAGCATGGCTACAATCCGAATGTATATTCATACAGCTCTTTGATAGACAGGTTGTTCAAAGATAAGCGATTAGATCTCGCCTTGAAAGTGCTGTCCAAAATGCTTGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACTGAAATGATTGACGGTCTATGCAAAGTTGGAAAGACTGATGAAGCATATAAACTTATGGTTATGATGGAAGAAAAGAAGTGTCATCCGAATGTTGTGACGTATACTGCAATGATTGATGGCTTTGGGAAAGCTGGAAGACTTGATAAATGCCTTCAGCTTTTTCAAAAGATGGCTTCCAAGGGCTGTGCTCCGAATTTCGTCACTTATAAGGTTCTGATAAACCATTGTTGTGCAGCTAGCCTGTTGGACGAGGCTCTTAAACTCTTGGAAGAGATGAAAGAGACACACTGGCCAAAGCATGTAGCAGGTTATCGTAAAGTCATTGAAGGGTTCAATAGAGAATTTATTGCTTCTCTGGATCTGTTGGATGAGTTTAGTGAAAAGGAAGCAGTACCAGTTTCCCCTATTTACAGAGTTCTGATCGATAGTTTTGCTAAGGCCGGAAGACTAGAGAAAGCTTTAGAACTGTACAAAGAAGTCTCATCATTCTTAGCACCATCAGCAGCTAACCGGAATATGTATATTTCTTTAATAGAGGGCCTTGCACTTGCTAATAGGGTTGATATGGCTTTTGATTTGCATGTTGATATGACTTTAAAAGGCATCATTCCTGAGGTTGGCACCGTCGTTCACCTGATCAAAGGTCTTTTGAGATTAAACAGGTGGGATCAAATACTGCAGCTTTCAGATGGGATATGCCAGGCGCATATACCCTCAAAGTTTACGAAGCAACACGCATTTATGAGAGATGTGAAGGCAGTGAAGCTGGAGGTTGGGGACAAGGTTTGGTCGGTAAGGATCTGTCTTGGACCTGACAATATGTCTGTCAAGATTGCCGCTGGCTGGAGTAGGTTCGTGAAAAAAAACTCGCTCAAACTCAGAGATGTTTGTGTGTTCAAGCTGATGGAAAAATCCCCTGAGGTCCGAATGAAGGTCACCATCATTAGAGGTGTCTGA
Protein Sequence:
  • >Lus10025533|Linum_usitatissimum|B3|Lus10025533
    MSGLGYAMDGFTLGCFACSLCKAGKWREALKLIEDEEFKPDTVLFTNMISGLCEASLFDVAMDFLTRMRVYSCIPNVLTYRILLCGCLRKKQLGRCKRILNMMITEGCYPSPAIFNSLVNAYCKLRDYAYAYKLIKKMMECGCQPGYIVYNIFIGGVCGNQELPEASALELAEKAYREMLDAGVTLNKVNVSNLAWCLCGAGKFEEAYCLISEMMSKGFIPDTSTYSQVITCLCNSTKVEKAFLLFQEMRKNGILPDVYTYTQLIDSFCKVGLLKQARRWFDEMEENGCAPNVVTYTALIHAYLKARKVSDANEIFELMLSKGSVPNVVTYTALIDGYCKAREIEKACKIYARMKQENVENSEVDMYFGVVDTESEEPNHFTYGALVDGLCKAHKVKEAHELLEAMSASGCQPNHIIYDALLDGCCKVGKLDEAQEVFTQMIEHGYNPNVYSYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKKCHPNVVTYTAMIDGFGKAGRLDKCLQLFQKMASKGCAPNFVTYKVLINHCCAASLLDEALKLLEEMKETHWPKHVAGYRKVIEGFNREFIASLDLLDEFSEKEAVPVSPIYRVLIDSFAKAGRLEKALELYKEVSSFLAPSAANRNMYISLIEGLALANRVDMAFDLHVDMTLKGIIPEVGTVVHLIKGLLRLNRWDQILQLSDGICQAHIPSKFTKQHAFMRDVKAVKLEVGDKVWSVRICLGPDNMSVKIAAGWSRFVKKNSLKLRDVCVFKLMEKSPEVRMKVTIIRGV*