Information report for Lus10025533
Gene Details
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Functional Annotation
- Refseq: XP_011026357.1 — PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial
- Swissprot: Q9M9X9 — PPR18_ARATH; Pentatricopeptide repeat-containing protein At1g06710, mitochondrial
- TrEMBL: A0A2K1ZTA7 — A0A2K1ZTA7_POPTR; Uncharacterized protein
- TrEMBL: A0A385JI99 — A0A385JI99_POPTO; Tetratricopeptide repeat-like superfamily protein
- STRING: Lus10025533 — (Linum usitatissimum)
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G06710, AT3G22470, AT2G39230, AT3G48810
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.8Z4KH7, arahy.Tifrunner.gnm1.ann1.D88Z08, arahy.Tifrunner.gnm1.ann1.HPMJ5J, arahy.Tifrunner.gnm1.ann1.U637CY, arahy.Tifrunner.gnm1.ann1.IGD5ZI, arahy.Tifrunner.gnm1.ann1.4NT8ND, arahy.Tifrunner.gnm1.ann1.KEB86C, arahy.Tifrunner.gnm1.ann1.P9T7FJ, arahy.Tifrunner.gnm1.ann1.HV5MI3, arahy.Tifrunner.gnm1.ann1.FA2NZF
- Brassica oleracea: Bol041075
- Daucus carota: DCAR_016546
- Glycine max: GmPPR576
- Lupinus albus: Lalb_Chr07g0185941
- Medicago truncatula: Medtr1g031720
- Oryza sativa: YSA, Rf4;PPR782a, Rf1a;Rf5, RF6
Sequences
CDS Sequence:
- >Lus10025533|Linum_usitatissimum|B3|Lus10025533
ATGTCAGGTTTAGGGTATGCAATGGATGGTTTTACTTTGGGATGTTTTGCTTGTTCTCTTTGTAAAGCTGGGAAATGGAGAGAAGCATTGAAGTTAATTGAGGATGAGGAATTCAAACCTGATACTGTGCTTTTTACCAACATGATATCCGGATTGTGTGAAGCCTCGCTCTTTGACGTAGCTATGGATTTCTTAACAAGAATGCGAGTTTATTCTTGTATTCCTAATGTTCTGACTTATAGGATTTTGCTCTGTGGGTGTTTGAGAAAGAAACAGCTTGGTAGATGTAAAAGAATTTTGAATATGATGATTACAGAAGGATGCTACCCAAGTCCAGCCATTTTTAACTCTTTAGTTAATGCTTATTGCAAATTGAGGGATTATGCTTACGCTTATAAACTTATTAAGAAAATGATGGAATGTGGGTGCCAGCCGGGTTACATAGTCTACAACATATTTATTGGTGGTGTTTGTGGAAATCAGGAGTTGCCTGAGGCGAGTGCCCTTGAATTGGCTGAAAAAGCATATCGGGAAATGCTCGATGCGGGAGTCACATTGAATAAGGTCAACGTTAGCAACCTTGCATGGTGTCTTTGTGGTGCTGGAAAATTCGAGGAGGCATATTGTCTCATTAGTGAAATGATGAGCAAGGGCTTTATACCAGATACCAGTACATATTCCCAGGTCATTACTTGTCTCTGTAATTCGACCAAAGTAGAAAAGGCCTTTCTATTATTTCAAGAAATGAGGAAGAATGGAATTCTGCCAGATGTGTACACATATACGCAATTGATCGACAGTTTTTGTAAGGTAGGTTTACTAAAACAGGCTCGCAGGTGGTTTGATGAAATGGAGGAAAATGGATGTGCCCCTAATGTAGTGACTTACACAGCACTTATACATGCTTACCTTAAAGCAAGGAAGGTGTCCGATGCAAACGAAATTTTCGAGCTGATGTTGTCCAAGGGCTCAGTTCCTAATGTCGTTACATATACAGCACTGATCGATGGATATTGTAAAGCCAGAGAGATTGAGAAGGCTTGCAAAATATATGCAAGAATGAAACAGGAAAATGTTGAAAATTCAGAAGTAGATATGTATTTTGGGGTGGTTGATACAGAGTCCGAGGAACCAAATCATTTTACGTATGGAGCTTTGGTTGACGGCTTATGCAAAGCTCATAAGGTGAAAGAGGCACATGAGTTATTAGAAGCAATGTCGGCAAGTGGTTGTCAGCCGAATCATATCATATATGATGCCCTTTTAGATGGATGTTGCAAGGTCGGTAAGCTAGATGAGGCGCAAGAGGTGTTTACTCAGATGATAGAGCATGGCTACAATCCGAATGTATATTCATACAGCTCTTTGATAGACAGGTTGTTCAAAGATAAGCGATTAGATCTCGCCTTGAAAGTGCTGTCCAAAATGCTTGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACTGAAATGATTGACGGTCTATGCAAAGTTGGAAAGACTGATGAAGCATATAAACTTATGGTTATGATGGAAGAAAAGAAGTGTCATCCGAATGTTGTGACGTATACTGCAATGATTGATGGCTTTGGGAAAGCTGGAAGACTTGATAAATGCCTTCAGCTTTTTCAAAAGATGGCTTCCAAGGGCTGTGCTCCGAATTTCGTCACTTATAAGGTTCTGATAAACCATTGTTGTGCAGCTAGCCTGTTGGACGAGGCTCTTAAACTCTTGGAAGAGATGAAAGAGACACACTGGCCAAAGCATGTAGCAGGTTATCGTAAAGTCATTGAAGGGTTCAATAGAGAATTTATTGCTTCTCTGGATCTGTTGGATGAGTTTAGTGAAAAGGAAGCAGTACCAGTTTCCCCTATTTACAGAGTTCTGATCGATAGTTTTGCTAAGGCCGGAAGACTAGAGAAAGCTTTAGAACTGTACAAAGAAGTCTCATCATTCTTAGCACCATCAGCAGCTAACCGGAATATGTATATTTCTTTAATAGAGGGCCTTGCACTTGCTAATAGGGTTGATATGGCTTTTGATTTGCATGTTGATATGACTTTAAAAGGCATCATTCCTGAGGTTGGCACCGTCGTTCACCTGATCAAAGGTCTTTTGAGATTAAACAGGTGGGATCAAATACTGCAGCTTTCAGATGGGATATGCCAGGCGCATATACCCTCAAAGTTTACGAAGCAACACGCATTTATGAGAGATGTGAAGGCAGTGAAGCTGGAGGTTGGGGACAAGGTTTGGTCGGTAAGGATCTGTCTTGGACCTGACAATATGTCTGTCAAGATTGCCGCTGGCTGGAGTAGGTTCGTGAAAAAAAACTCGCTCAAACTCAGAGATGTTTGTGTGTTCAAGCTGATGGAAAAATCCCCTGAGGTCCGAATGAAGGTCACCATCATTAGAGGTGTCTGA
Protein Sequence:
- >Lus10025533|Linum_usitatissimum|B3|Lus10025533
MSGLGYAMDGFTLGCFACSLCKAGKWREALKLIEDEEFKPDTVLFTNMISGLCEASLFDVAMDFLTRMRVYSCIPNVLTYRILLCGCLRKKQLGRCKRILNMMITEGCYPSPAIFNSLVNAYCKLRDYAYAYKLIKKMMECGCQPGYIVYNIFIGGVCGNQELPEASALELAEKAYREMLDAGVTLNKVNVSNLAWCLCGAGKFEEAYCLISEMMSKGFIPDTSTYSQVITCLCNSTKVEKAFLLFQEMRKNGILPDVYTYTQLIDSFCKVGLLKQARRWFDEMEENGCAPNVVTYTALIHAYLKARKVSDANEIFELMLSKGSVPNVVTYTALIDGYCKAREIEKACKIYARMKQENVENSEVDMYFGVVDTESEEPNHFTYGALVDGLCKAHKVKEAHELLEAMSASGCQPNHIIYDALLDGCCKVGKLDEAQEVFTQMIEHGYNPNVYSYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKKCHPNVVTYTAMIDGFGKAGRLDKCLQLFQKMASKGCAPNFVTYKVLINHCCAASLLDEALKLLEEMKETHWPKHVAGYRKVIEGFNREFIASLDLLDEFSEKEAVPVSPIYRVLIDSFAKAGRLEKALELYKEVSSFLAPSAANRNMYISLIEGLALANRVDMAFDLHVDMTLKGIIPEVGTVVHLIKGLLRLNRWDQILQLSDGICQAHIPSKFTKQHAFMRDVKAVKLEVGDKVWSVRICLGPDNMSVKIAAGWSRFVKKNSLKLRDVCVFKLMEKSPEVRMKVTIIRGV*