Information report for Lsa018449
Gene Details
Functional Annotation
- Refseq: XP_023749906.1 — B3 domain-containing transcription repressor VAL2-like isoform X1
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A2J6M8X7 — A0A2J6M8X7_LACSA; Uncharacterized protein
- STRING: XP_009768196.1 — (Nicotiana sylvestris)
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g002708m, orange1.1g002702m
- Gossypium hirsutum: Gh_A10G1335, Gh_D10G1137
- Manihot esculenta: Manes.09G117700.1.p
- Nicotiana tabacum: XP_016435545.1, XP_016433628.1
- Petunia inflata: Peinf101Scf00642g03015.1
- Populus trichocarpa: Potri.016G136500.2, Potri.016G136500.1, Potri.006G108300.1
- Solanum lycopersicum: Solyc10g075030.1.1
- Vitis vinifera: GSVIVT01030182001
Sequences
CDS Sequence:
- >Lsa018449|Lactuca_sativa|B3|PUT-187a-Lactuca_sativa-27145
NNTACTGCATATGAACAACTAGCATTTTGTGAACTATTCCACCTAGAAGACACTGGTTGGAGGGAGTGCACTTCATGTGGCAAGCGTCTCCATTGTGGATGTATTGCTTCTACTGCTGCCATTGAACTACTTGAAAATGGTGGTGTAAGTTGTGCCAGCTGTTCAAATAGTTTGAGACGTGACCCTAGCACGAGTGAGGATAAGCTTGGAGAATGTGGCATTTCAGTAGAAAATAGCATTGGAGAAATACCATCATCCTCTAATAAAATGTTGAAACAATCAAACGATGATGGACAAAAATACCCTCTTCCATCTGATAACGATGACACATCAACATCTCAAATGAAACAAGAGGAAATCTTTCCCATTTCAACTTTCGAACCTGCTCATGGAACCAAATCATTTAAGTATAGAGAAACTACAGGGGGTAAAGATGTAATTGGATCACTTGTTCAAACAGACTTAACTATGGGCTTAGCTTCTTCTTCTTCCTCTTCACAAAAATCACCTTTTCTTCTTCCTCTTGATGGAAGGGAATTGAATAAACCCTTTCAACAAGGACCTTGGTCTCGCCATATTTTACCCAAAGTGCCCAAATCCGTCTTTTCACAAGGATTTGATGCAAATATTGGAATGAATTCACAGATACGAATTGCTAGGCCTCCTGTTGAAGGGCGTATTAAAAATCAGCTTCTTCCTCGTTATTGGCCTAGAATTACAGAACAAGAGTTGCAGCAGATATCTGGAGATTCAAATGCTACAGTTGTTCCACTATTTGAGAAGGTTCTTAGTGCCAGTGATGCTGGTAGAATTGGTCGTTTGGTTCTCCCAAAAGCATGTGCTGAAGCATATTTTCCACCTATTTCTCAACCCGAGGGGCTTCCAATCAGAATACAGGATGTGAAAGGCAAAGAATGGCTTTTTCAGTTCAGATTTTGGCCAAATAACAACAGCCGTATGTATGTTCTAGAAGGTGTCACTCCATGCATACAGTCTATGCAGTTGAAGGCTGGAGATACTGTGACATTCAGCCGCATGGAACCTGAAGGAAAGCTTCTTATGGGCTTCCGAAAAGCCTCAGTTAGTGCTTCTGTACAGGATTCTCGAATGGGTGCAATGCATAATGGAGTATTTCCAAGTGGATCTTCACCTTCTTTATCTGGTGTCGAGAATCTTTCAAATATGAGTGATTATTCTGGTCTTCTTCAGTCACTAAAGAGAAACACAGATTCCCATTTAAATCCATTGTCAAGAAGTATGAGCTTGACTATTGGAGATGCCAGCTGGCATGCAAATGAAAAGCAAGGAAGCAAGTCAAGGGCTGACTCATTTCAACCAGACAAAAAAAGAAGTCGAAATATTAGTTCAAAAAGTAAAAGATTGTTGATTGAAAGTCAAGATGCTCTTGAGCTGAAATATACATGGGAAGAATTACAAGATATGTTGACTCCACCTAACACTTTGAATCCAACTAGTGTCACCATTGAAGACCAAGATTTTGAAGAATATGAAGAACCTCCTGTTTTTGGAAAGGGGAGTATATTCACTGCTCGCTCTTCTGGGGAACAAGAACAGTGGGCCCAATGTGATAACTGTTCAAAATGGCGAAGGTTACCTATTGATTTTCTTCTCCCTGCTAAATGGACATGCCAAGAAAATGTCTGGGATCACATGAGGTCTGCCTGTGTTGCACCAGATGAACTAGGCCCTAGGGAACTCGACCACCTTCTTAGACTAGCTAAAGAGTTTCACAAATGGAGAAACTCCATGAACCAAAAGCCACCACCAGACCAAGACCAGGGGGAGAACCAGAACCAGAACCAGGCGGAACCACCACCGGACCCATCGGTTGCAACCACCACGAAACACCCAAGGCACCGCCCGGGGTGCTCCTGCATAGTCTGCAGTCAACCGCCAAGTGGCAAAGGCAAACACAAGCCAAACTGCACTTGTAATGTGTGTATGACAGTTAAACGAAGATTCAAAACCCTAATGTTACGCAAACAGCAACGCCAATCAGAACGTGAAGCTGAAATTGCAGAAAAAAATAATCAACTCAAATTGGGACCCACTTCGAATCCCAAAGAAGAAATTGAAGGTGTTATGAAGTCACAACAATCATCAGGAGGAGGCGGGAAAAGTCAGTTGGATTTGAACATACGACCTCATCCTCATGTAAGCATGATGAGTCTTCTTCAAGCTGCAAATCAGCCATTAGAGACTTACATGAAGCAGAATGGTCTTACCACATTAATCCCTGAGCCACAAGGTACTAGCTCTGGTTCACAGCCATTACCACAACAACAAGCAAGCTCAACAGCTCAAGATGAGCAGAATAACCAAAACAGTTCGTAA
Protein Sequence:
- >Lsa018449|Lactuca_sativa|B3|PUT-187a-Lactuca_sativa-27145
XTAYEQLAFCELFHLEDTGWRECTSCGKRLHCGCIASTAAIELLENGGVSCASCSNSLRRDPSTSEDKLGECGISVENSIGEIPSSSNKMLKQSNDDGQKYPLPSDNDDTSTSQMKQEEIFPISTFEPAHGTKSFKYRETTGGKDVIGSLVQTDLTMGLASSSSSSQKSPFLLPLDGRELNKPFQQGPWSRHILPKVPKSVFSQGFDANIGMNSQIRIARPPVEGRIKNQLLPRYWPRITEQELQQISGDSNATVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPIRIQDVKGKEWLFQFRFWPNNNSRMYVLEGVTPCIQSMQLKAGDTVTFSRMEPEGKLLMGFRKASVSASVQDSRMGAMHNGVFPSGSSPSLSGVENLSNMSDYSGLLQSLKRNTDSHLNPLSRSMSLTIGDASWHANEKQGSKSRADSFQPDKKRSRNISSKSKRLLIESQDALELKYTWEELQDMLTPPNTLNPTSVTIEDQDFEEYEEPPVFGKGSIFTARSSGEQEQWAQCDNCSKWRRLPIDFLLPAKWTCQENVWDHMRSACVAPDELGPRELDHLLRLAKEFHKWRNSMNQKPPPDQDQGENQNQNQAEPPPDPSVATTTKHPRHRPGCSCIVCSQPPSGKGKHKPNCTCNVCMTVKRRFKTLMLRKQQRQSEREAEIAEKNNQLKLGPTSNPKEEIEGVMKSQQSSGGGGKSQLDLNIRPHPHVSMMSLLQAANQPLETYMKQNGLTTLIPEPQGTSSGSQPLPQQQASSTAQDEQNNQNSS