Information report for Lsa000631
Gene Details
Functional Annotation
- Refseq: XP_023758298.1 — B3 domain-containing protein Os07g0563300
- TrEMBL: A0A2J6MGX4 — A0A2J6MGX4_LACSA; Uncharacterized protein
- STRING: XP_006467887.1 — (Citrus sinensis)
- STRING: XP_006449227.1 — (Citrus clementina)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g002739m
- Cucumis sativus: Cucsa.045980.9, Cucsa.045980.1, Cucsa.045980.2
- Gossypium arboreum: Cotton_A_25584_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D05G1572, Gh_A05G1407, Gh_A10G0200
- Juglans regia: WALNUT_00027247-RA
- Malus domestica: MDP0000274788
- Manihot esculenta: Manes.16G021300.1.p
- Nicotiana benthamiana: Niben101Scf06222g02001.1
- Nicotiana tabacum: XP_016445998.1, XP_016445997.1
- Petunia inflata: Peinf101Scf00287g17023.1
- Prunus mume: XP_008224939.1
- Prunus persica: Prupe.4G036100.1.p
- Pyrus bretschneideri: Pbr000285.1
- Ricinus communis: 29917.m001969
Sequences
CDS Sequence:
- >Lsa000631|Lactuca_sativa|B3|gnl|UG|Lsa#S58694315
ATGGCTTCGTCTTCCGGTTCAACGAAGCTGTGCTTCAATTCGACTTGTAAAGAGGCTCTGGAAGTCCCTAGACAAGGTTGGCTTTGCCGGACGGGAGACTTCGCTGACCTCTGCGATCGATGCTCTTCTGCTTTTAAAGATGGAAAATTCTGTAATACATACCACATGAATGCTTCTGGTTGGAGATGTTGTGAGTCTTGTGGAAAGCAAATTCATTGTGGATGCATAGTGTCATTCCACATGTTCATATTGTTGGATGCTGGAGGAATTGAGTGTATCAACTGTGCAAAATCAGAATACATCTTGACACCAAATCCTACATGGCCATCTTCTCCCCACTTTCTCACGGGTCCCGCTGAGAGAATTCGAGATATTTCATCCAAAAATTGGAGATCAATAGCAGGATCAGGTCCTGTGCCATGGAAGCAAGCACCTTATCTCTTCAATTCTTCTAAACTTCAACCTGATTTCCTCTCTAACATTGATAAACCTCTTTCAAGGGAACAATTAACTTCATGTTCATTGACTAGAAGTATAATACATGATCCTTCTGAAAGATTAGTGAATGACAGCTGGCAGATGACCGGTGATAGAGCCAAAGCCACTGGGGTACAGTATGATGGAAAACATAATTTGTTTCAATCTTTCTTTTCAAATGAACTTGCTACCCCTGTTTCTAGTTTACCAGCAACATTCATGGCACAAGATCAAAAGAGTGAAAAAGGAAAAGCATCTGGACAATTTTGCCCTCCACCATCAGTAGGGAAATGTTGCTCCAGTAGTAATACTAATAGTCCACCTGGCACATCTCTTGAAAGTCAAACTTACAGTGGAAAGGGTCAAGGAGAAAAACGGGGTCGACATCAGTTAATTCCCCGATATTGGCCTCGGTTAACAGATCAAGAACTACAACAGATCTCTGGAGGGTCAAATGCCAAAATTACCCCTTTGTTTGAGAAAGTGTTGAGTGCTAGTGATGCTGGGAGGATAGGGCGATTGGTGCTGCCAAAAAAATGTGCAGAGGCTTATCTTCCACCAATTTCTCAGCCTGAAGGTTACCCCCTTGTAGTTCAAGATTTAAAGGGAAAAGATTGGGTGTTACAGTTTAGATTTTGGCCTAATAATAATAGTAGAATGTATGTTCTAGAAGGAGTCACTCCATGTATACAGTCCATGCAGTTGCAAGCTGGTGATACAGTAACATTTAGTAGGTTAGAGCCTGAAGGAAAACTTGTGATGGGATTCAGAAAAGCATCACCCTCTTCTCCATCTTATCATGTCACCGAGGTTTCTACTCATGAAGAAACTTCAAAGGGTAGTTTCGGAAATAAATCTAGAAATCCAGATGGGACATGGGCAGAAGTTGATAAAATTGCTAAAAGGAAGAAGGGGGGAAAGATGTGTTCAAATAACAAACATGTTAAACCTAATGATGAAGAGATAGTTCGAGTAAATGTTACTTTAGAACAAGTTCAAGGATTGTTGAGACCACCTCTTACTAATTCCTCCACCATTGTGGTTATTGAGGGTGTTGAATTTGAGGATTTTCAGGAGGAACCGATTATAGGGAGTCCTACAAACTTTTCAACGATTAGTCACGCATCTTGTAACAAGAACGAATCAGAAAACCAAGGACTTGATGCGCTTGCTAATTTAGCAATCCAAGATGGCAAGGCTACAAAGTCGCCAAGTGGCACCAATCACAAATCGGTTTCTGTACACCATGGAGATGAGAAACATTTAGAGAAAGAAGTAGGGAATGTGGGACAGAATCCAAATGAATTGATGTATGCCGACGTTATTCGGTATAATAATAACCAAAACCAGAAAATGGGCCCCAGTCAAAGTATTGAAAAAGTATCTACTAGTCAGTCGTTTAAAAGTCAAAATATTGACTTGAATATACAACCTGAACGTGAAGAAGAATGTTCTCCGGTTTCTGATATGGGGATCATGATGTTAGTTCAAGAATCTACACATAGATACATAAGGCAACAGAAGCTATCATTTAATGATGTAAATTCATGA
Protein Sequence:
- >Lsa000631|Lactuca_sativa|B3|gnl|UG|Lsa#S58694315
MASSSGSTKLCFNSTCKEALEVPRQGWLCRTGDFADLCDRCSSAFKDGKFCNTYHMNASGWRCCESCGKQIHCGCIVSFHMFILLDAGGIECINCAKSEYILTPNPTWPSSPHFLTGPAERIRDISSKNWRSIAGSGPVPWKQAPYLFNSSKLQPDFLSNIDKPLSREQLTSCSLTRSIIHDPSERLVNDSWQMTGDRAKATGVQYDGKHNLFQSFFSNELATPVSSLPATFMAQDQKSEKGKASGQFCPPPSVGKCCSSSNTNSPPGTSLESQTYSGKGQGEKRGRHQLIPRYWPRLTDQELQQISGGSNAKITPLFEKVLSASDAGRIGRLVLPKKCAEAYLPPISQPEGYPLVVQDLKGKDWVLQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASPSSPSYHVTEVSTHEETSKGSFGNKSRNPDGTWAEVDKIAKRKKGGKMCSNNKHVKPNDEEIVRVNVTLEQVQGLLRPPLTNSSTIVVIEGVEFEDFQEEPIIGSPTNFSTISHASCNKNESENQGLDALANLAIQDGKATKSPSGTNHKSVSVHHGDEKHLEKEVGNVGQNPNELMYADVIRYNNNQNQKMGPSQSIEKVSTSQSFKSQNIDLNIQPEREEECSPVSDMGIMMLVQESTHRYIRQQKLSFNDVNS