Gene Details:

  • Gene ID: LPERR07G23240.2
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Leersia perrieri
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015646777.1  — B3 domain-containing protein Os07g0679700 isoform X1
  • Swissprot:  Q6Z3U3  — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
  • TrEMBL:  A0A0D9X2Y7  — A0A0D9X2Y7_9ORYZ; Uncharacterized protein
  • STRING:  LPERR07G23240.1  — (Leersia perrieri)

Gene Ontology:

  • GO:0010030  — Biological Process — positive regulation of seed germination
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:2000034  — Biological Process — regulation of seed maturation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005739  — Cellular Component — mitochondrion
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >LPERR07G23240.2|Leersia_perrieri|B3|LPERR07G23240.2
    ATGGCGGCGCTGGTGGCGAAGAGGTGCATGAACGCCGCGTGCGGGGCTCCGGCGGGAGGGCAGGAGTGGAGAAAGGGCTGGCCTTTGCGATCCGGCGGCTTCGCCGTGCTCTGCGACAAGTGCGGGTTGGCATATGAGCAGCTTGTGTTTTGTGATATATTTCATCAAAAGGAGTCTGGCTGGAGGGACTGCTCATTTTGTGGGAAGGTTCTAAGTCCAGTTGTTCCCAAGCTTTTTCCATCTCCAAATAACCAGAGACTTTTTGGTAAAAGTGATGAATTACTGTCAGGTAGACCACTGGAGACAACCTCCGTTATGGTCGATGCCAGAAATGATGATCTTACTATTATTTCTAAAAACAGCCATCCATTCATGGTAAAAAACATAGAAGCTGGGCAAAGTAGTAATATTTTGAGGCAAAAAGAACTAGAGAATGGTGCAAGGCAGATTAAATGGGAACTACCTACCCTTAGTATCGGGGACATGGGAAGGATGCCTTTCCTAACTAGATCTCAGAGTGCATTAGAGCCACCTCAGTATACTCGAAGAGATGAAAATAAAGATCCAACTACAGAAAGCACAACAAGTGAATCACTTTCTGAGGCTTGCCTCAACATGAGCTTGGGAATTGCTAGTAATGGAAACAAGTTGGAGGCTACTTCAACTGTGGAAAGACCTATGCTATCACCAACAACAGGATTTGCTGAGGGAAGAGAGCTTACCACTGCATTGTCTCCATTTCAGCACGCACAAAGGGCTCGTCATTTTCTAACCAGACCGCCAAGGGTTGGTGAAGGTGCTGTTTTTGATCCAACAAAAGATATGCTTCCACATCTTCGTGTTGCGAGGCCACCTGCAGAGGGTAGGGGCCGTAATCAATTACTTCCTCGATATTGGCCTAGAATAACAGACCAAGAGCTACAGCAAATTTCTGGAGATTCAAATTCCACCATTGTTCCCCTGTTTGAGAAGGTTCTAAGCGCCAGTGATGCTGGCCGCATAGGTCGCCTTGTTCTACCAAAAGCCTGCGCGGAGGCATATTTCCCTCCAATTTCTCAACCAGAAGGTCGTCCCTTGACAATTCAAGACGCAAAAGGCAAAGAATGGCACTTTCAGTTTAGATTCTGGCCAAATAACAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAATCATTACAGTTACAGGCTGGTGACACAGTGACTTTTAGTCGGATAGAGCCTGGAGGGAAACTTGTTATGGGCTTCCGAAAGGCCACAAACACTGTCAGTTTGCCAGACTCACAGATTTCAGCTATTGCCAACGGTTCCATTCTTGGTGATACATTGTTTTCTAATACAAATGAGAATCTAGCAATAGTAAGTGGTTATTCAGGATTTCTTCAGTCAATAAAGGGGGCTGCAGATCTCCATACAAGCTCTCTATACGATCATCATGTGAACTCAGCCGATGGGGATGCTAGTTGGCTTAAGACAGATAAATTCGGTAGCAGGCCAGATGATGGTCCTTTGCAATTTTTAAAGAGAGGCCGCAATATTGGTTCCAAAAGCAGAAGGCTTTCAATGGATACTGAAGAAGCCTGGGAACTAAAGCTTTACTGGGATGAGGTTCAGGAGCTGCTGCGGCCTGCTCCAACTGCAAAACCTACTGTCGTGATGATTGAAGACTATGAAATTGAAGAGTATGATGAACCACCTGTGTTTGCGAAGAGATCAATTTTCACCATCCGCTCTACTGGGGAACATGATCAATGGATCCAGTGTGATGATTGCTCAAAATGGCGCCGATTACCGCTTAATGTTATTGTTGCCTCCAAGTGGACATGCGCTGACAACACAATTGATTCAAAAAGCTGTTCCTGCTCTGCACCTGAAGAATTGACCCCAAAAGAGTTGCACATTGTTCTCCAGCAGTATGAAGATATGAGGAGGCGAAGGAACAGCTTTGGATTTAAGCAGAACATCCCCGAAATGGATGCGGCCAGCTTTGATGCCTTGACCACTGCGGCGGTCTTTGGTGAGGTCGGAAACCAAGGTTCCCCTTCTGTCGCAACAACCACGAAGCACCCCCGGCATCGTCCAGGCTGCACCTGCATAGTGTGTATCCAGCCACCCAGCGGGAAGGGCCCAAAGCACAACCCAGCATGCACCTGCAATGTCTGCATGACTGTCAGGCGTCGCTTCAAGACACTGATGATGAGGAAGAAGCAACGGCAGTCGGAGCGAGAGGAGGCTGAGACGAGCAAGAAGGTTGCCTGGATGAACAGAGATGAGCCTGAGGGAAGCAGCTTGTCAAGATCCCCACAGACACTGGACACTACCCGAGACGGAGATGTGACCATGTTTGACAAGGTTGACATCAACAAGGGCCACATTGACCTGAACTTCCACCCTACCGCCATCCGTGACGAGGATCAACACAATGCCGGGCAGCCTCGAGCGAGCATGGTCAGCCTCTTGGAGGTCGCAAACCGCCCCCTTGAGAATTACATGAAGCAGAACGGCCTGACGAGTCTGGCTGGGGAGCAAGGGAGTTCCAGTACATGTACAAATGCAGCAGCCACGGTTCCTCAGCCAACTCCGGTGGAGAGCGAAGAACGGACGTCGAACAATGAAGGGCGTGTGCCGTCGGCAGAGCAACCGGAGAGCATGGCCGTGGACGAGGCCGGAGATAACCAGCCGGACAAGGCTGCTGCCAGTGACGCTGCTGCTGCTTGA
Protein Sequence:
  • >LPERR07G23240.2|Leersia_perrieri|B3|LPERR07G23240.2
    MAALVAKRCMNAACGAPAGGQEWRKGWPLRSGGFAVLCDKCGLAYEQLVFCDIFHQKESGWRDCSFCGKVLSPVVPKLFPSPNNQRLFGKSDELLSGRPLETTSVMVDARNDDLTIISKNSHPFMVKNIEAGQSSNILRQKELENGARQIKWELPTLSIGDMGRMPFLTRSQSALEPPQYTRRDENKDPTTESTTSESLSEACLNMSLGIASNGNKLEATSTVERPMLSPTTGFAEGRELTTALSPFQHAQRARHFLTRPPRVGEGAVFDPTKDMLPHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSILGDTLFSNTNENLAIVSGYSGFLQSIKGAADLHTSSLYDHHVNSADGDASWLKTDKFGSRPDDGPLQFLKRGRNIGSKSRRLSMDTEEAWELKLYWDEVQELLRPAPTAKPTVVMIEDYEIEEYDEPPVFAKRSIFTIRSTGEHDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDSKSCSCSAPEELTPKELHIVLQQYEDMRRRRNSFGFKQNIPEMDAASFDALTTAAVFGEVGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLMMRKKQRQSEREEAETSKKVAWMNRDEPEGSSLSRSPQTLDTTRDGDVTMFDKVDINKGHIDLNFHPTAIRDEDQHNAGQPRASMVSLLEVANRPLENYMKQNGLTSLAGEQGSSSTCTNAAATVPQPTPVESEERTSNNEGRVPSAEQPESMAVDEAGDNQPDKAAASDAAAA