Information report for LOC_Os07g37610.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_015647112.1 — B3 domain-containing protein Os07g0563300 isoform X1
- Swissprot: Q0D5G4 — Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
- TrEMBL: B9FXX7 — B9FXX7_ORYSJ; Uncharacterized protein
- STRING: ORGLA07G0151800.1 — (Oryza glaberrima)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >LOC_Os07g37610.1|Oryza_sativa_subsp._japonica|B3|LOC_Os07g37610.1
ATGTCGTCGCCGGCGCAGCCGCCCCCGACGCGGCCGCCGGTGGCCGCCCCGCCCCCATCCCTCGCGGCGGCGGCCCCCATCTCGGTGCAGCCGCCCCCGCTCCAGCCGAAACCGCCGCCGCATCCGCAGCAGCCGCCTCAGGCGGTCGTCTCGGTTGGGGTTGGGCCGCCGCCGCCGACGCCGCAGCATCAGCAGCAGCAGCAGGGCCCCCCCGGTCACGCGCCGCCGCAGCAGCGGCCCAGGATCTGCTTCAACGCGCACTGCAAGGACCCCAAATCCGACGGCCCGCGCCGCCGCGGATGGCGACTCCGCAACGGCGACTTCGCCGAGCTCTGCGACCGATGCTATCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGGAGGAACTGCGAATCCTGCGGGAAGAGGCTGCACTGTGGGTGCATTGTGTCGGTCCATGCATTTGTTCACCTCGACGCCGGAGGGGTCGAGTGCGTCATGTGTGCTCGCAAGTCGCATGCTGCAATGGCACCAAGTCAGATATGGTCATCTTCCATGCATATGGCTCAAAATGTAGCTGATAGAAAAGACAATTTTGTCAAGAGCTGGAGACCTCCTGCCGGGCAATTTTCAAGCCAGTGGCGGCAGAATAATATGTGGAGTATGTCCACCATGCAGTCTGACTTGCAGCAGCGCCTAGCTTTTGAGTTTGATAGGCCTAGTGGCAGTGAAAAATTGCTTCCAGGGCGCACTTTTATTCATGCCCATGAGAAGAAATTTGATGACATGCATGACAGATCAACAACACCTGCTGGCATGAACCAGATTATGAGGGAGAGGTATGCCAATGGGCATACTCAGCACACCACCCTGGATCCGACGTACGCTTACACTCTCTATCACAGAGAAGGAACAAATCCAAATCTTCATGACCATAGTCACCATGCAGGAGAAAATGACCATTTGACTGCAAGGAAAGGAGTAACTTCAGATCCTTGTTCCTCTGTATCTACTACCTTCAAGCTTGATTCACACCATCCGTCCATTTTGAAAGATGATCCATCAGCCGTACCAGCTGGGTTGTCTTCTAATTTTTCATCAGCAAATGGCCCAAAAGACCATATCAGAATTGGACCAACTCAGCAGCAGCAGCAAATGGCTTCCTCCTCATTGCAGAAACAATTCTATTCCCATAGTGTGATTGATAACGATTTTCAAGCGCAATTGCGCAATGGAAGGCCTAGAATGGATGCAAAGGCGAGATCTCAGTTGCTTCCACGCTATTGGCCTAGAATAACAGATCAAGAGCTACAGCACCTATCTGGAGACTCAAATTCTGTTATTACCCCTTTGTTTGAGAAAATGTTAAGTGCTAGTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGGATGCTACTGGTAAGGAATGGGTGTTCCAGTTCCGCTTTTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGTAACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCAGAACAGGACCAACCTACAAAGCCTGCCAATGGTGTACTACCCCCTCCAGAAGCAAATAATAAAGTTGTTGTCCCAGATTCTAGTCCTAATGCTGCTGTACCTCGACCAATTAAAGTCAACACAGAGAGCAAAAGTTCCAGCCCTGTGGAACAAGCCACTGCCTGTAAAATTGACAAAGGTGCATTACCACAAAAGGAAGGGCCAGGAACTTCAAGTTCCTCCCCACTACCTGTCAAGAGAAAGGCAACTTCTGTTGGTCCGAAGATCAAACGGTTCCACATGGACAGTGAGGAATCCATGGAATTGAAGATAACATGGGAGGAAGCTCAAGAATTACTTCGTCCTCCTCCTAAGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGTGAGAATCATCAATGGGCTCAATGTGAGGATTGCTCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAGTGGACCTGCTCTGACAATAAATGGGATTCTGAAAGGTCTTCCTGTGATTCTGCCCAAGAGATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGGTGCTGCAAAAAAGACCAAAGGGAAGGTAGATACTGACAATATTGATGTTTCAGATGGGCTGGACACACTCGCAAATCTTGCAATTCTTGGTGAAGGTGAATCTCTCCCTTCCCAGCCAACCACAAGGCATCCCCGCCATCGCCCTGGCTGCTCATGCATAGTCTGCATACAACCACCCAGCGGAAAGGGACCAAAGCACAAACAGACGTGCACTTGCAACGTCTGTATGACAGTGCGACGCCGTTTCAGGACGCTTATGATGCGGCGCGAGAAGCGCCAGCAGTCAGAGAAGGACTCTGGGGTGCCTCGCAAAAGAGAGCCAGGTCAATCCAGCGAGCCAGTTCCACAATCTGGCTCTGGTGCTCATCCAACCAGTACTAGCTCTCCTCACCAGAGAGCAGATACCAACGGCGAAGGTCCTGAAGACATGTCCATTGACAACAAGAGGACCTCCTCTCCTGTCAAGAACCAGATTGACCTGAACAGTCAGCCTGAGCGGGAAGACGAGCAGTCACCGAAATCCGATGCGACGAGACTCCTCAGGGACAACCCAACCTAG
Protein Sequence:
- >LOC_Os07g37610.1|Oryza_sativa_subsp._japonica|B3|LOC_Os07g37610.1
MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADRKDNFVKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHSVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKKTKGKVDTDNIDVSDGLDTLANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT*