Gene Details:

  • Gene ID: Lj1g3v3690290.1
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Lotus japonicus
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_003551329.1  — B3 domain-containing transcription factor VRN1 isoform X1
  • Refseq:  XP_020206625.1  — B3 domain-containing transcription factor VRN1
  • Refseq:  XP_028213212.1  — B3 domain-containing transcription factor VRN1-like isoform X1
  • TrEMBL:  A0A371G9G9  — A0A371G9G9_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment)
  • STRING:  GLYMA18G30790.1  — (Glycine max)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Lj1g3v3690290.1|Lotus_japonicus|B3|Lj1g3v3690290.1
    ATGATTCAACCCATGGCTGGAAAATTTCCTCACCAGCCTCAGCTGAAGAAGCCAACTCACTTTTTCAAGATCATAAGTAGTCACAGCCTTCATGAAGGAAAGCTAATGATCCCAAGAGCGTTTGTGGAGAAATATGAAGAAGGCTTACCAAAAACTATGTTTCTTAAGCCTCCAAATGGTAAAGATTGGAAATTAAATTTGGTGAAACTTGATGGTAACATGTGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGCATCATTCTCTAGCTCATGGACATCTTCTGGTTTTCAAATACCAGAGAACTTCCCATTTTCAAGTACAAATCTTTGACATGAGTGCCTTAGAGATAAACTACAATTTCAAAAGAGTAGAAGGTAAAAGGGCCTCTAATAGTGAAGGAAATAAACCTCCAAATGATGAAAGTTCAGAAGATTACAGAGCAGGTCAAAAGAGAAAAGCTAACTTGGCATTTGATTTTTTTCAACCATGTAAATTAGAAACTGGGAGAGATGATAAAGTTCGAAATGACTTGAAATTTCAAAAGGTGGCTTTGGATCACACGAACAAAAAGTGCAAAGGAAAACAAATTCTTACTGCTAAGCAAGCTACAGCTCTCGACAGAGCAAATTCTTTCAAAACTTGTAAACCATTCTTCATGGCTTTCATGCACCCGTCATATTTCTATTGTAATCTGAGTATACCAGCCAAGTTTGGAAAGAAACACTTAGATTTGGGCCAGAACGTGGGTGATATCCAACTTAGGGTGTTAAATGGGAGATTTTGGCCTGCAAGGTACATAATCAGGGAAAACGGTGAAAGAAAAAGATTTGATCTCTCATATTCAGGATGGAAGGCATTTTCTAAGGACAATAAGTTGAAAGTAGGTGATGTTTGTGTCTTTGAGCTCATTCATGGGACTAAACTTACCTTTCTGGTTCACATCTTTCGAGAGTCAGAAAATTCAAATTGTCCAACATCTCAAGAATACTCAAATAAA
Protein Sequence:
  • >Lj1g3v3690290.1|Lotus_japonicus|B3|Lj1g3v3690290.1
    MIQPMAGKFPHQPQLKKPTHFFKIISSHSLHEGKLMIPRAFVEKYEEGLPKTMFLKPPNGKDWKLNLVKLDGNMWFQKGWKEFAEHHSLAHGHLLVFKYQRTSHFQVQIFDMSALEINYNFKRVEGKRASNSEGNKPPNDESSEDYRAGQKRKANLAFDFFQPCKLETGRDDKVRNDLKFQKVALDHTNKKCKGKQILTAKQATALDRANSFKTCKPFFMAFMHPSYFYCNLSIPAKFGKKHLDLGQNVGDIQLRVLNGRFWPARYIIRENGERKRFDLSYSGWKAFSKDNKLKVGDVCVFELIHGTKLTFLVHIFRESENSNCPTSQEYSNK