Gene Details:

Protein Features:

Annotation Proteins:

  • Refseq:  XP_018677365.1  — PREDICTED: regulatory protein viviparous-1-like
  • Swissprot:  P26307  — VIV1_MAIZE; Regulatory protein viviparous-1
  • TrEMBL:  M0UAB1  — M0UAB1_MUSAM; Uncharacterized protein
  • STRING:  GSMUA_AchrUn_randomP18520_001  — (Musa acuminata)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >GSMUA_AchrUn_randomP18520_001|Musa_acuminata|B3|GSMUA_AchrUn_randomP18520_001
    ATGCCCTCATCCTGTTATATACATAGTGGTTGGAAATGGTTCTTGATCAATCCTTGTGAAATAGGACTAGAGAACAAAATATCTCAGACCGTGGAGTGCGAGAGTCGGCGAAAGCAGGGAGATGTGGTGTTTGCCTCCGACGAGGTGGAGGAAGCCATGGCAGATCATAAGGTCGAAGGAGAGGAAAAAGTTTTAGGAGTTGGTTGTGGAGGAGACACGGCGGCAGGAGTGGACGACATCGTGCTGAATATAGACGGGGAGGATCTCATCTTCTCCGAGGACACATTTCCTTGCTTGCCCGACTTCCCATGCCTGTCTTCACCGTCGGCCACCCCCTCGCCGTCCTCCGCTTCCACCTTGCATGCAAAGAACGCAGTCCTGTCTTCTTGTTCCTCCGCTTCATCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCTTGGTCCTTCTTACAGTCGAGCGAGTTCGCCGATGGGCTCGACATCCTCGGGGACATCGACCTCTTCGATCTGTCGATTGATCCCTGGGACCCGCCTTCCCTCTTCCACGCCGACGAAGCCAAAGAAGGTCGTTTGCATGGTCACGGGGAAGGAGTGCCGCAGCAAGCTCAGGAGGAGGAGTCTTCGGAGGAACTGGCGAGGATATTCTTGGAGTGGCTAAGGAGCAACAAGGACTCGATCTCGCCGGAGGACCTCCGTAGCATCAAGCTGAAGCGCGCCACCATCGAGTGCGCTGCCCGCCGCCTCGGCCGTACTAAGCAGGGCAGGACGCAGCTGCTGAAGCTCATACTCACCTGGGTCCAGAACAACCATCTCCAGAGGAAGCGCCATCGGTTGCCGTATTCCTACGACCACCAGCCCCGGCCGTTTCCCATCTCCCCTAACCCTAATCAACTCGACTACAACTGCAATCCTTGGAGCCCCTACTCCATGGATCCTTCGACGGCGGCTACGCATCCAGCCTTACTGAGCGCCTACGCCGGCGGCGGCAACGGTGAGATGGGGTATCCCAGTGCAACAGCCAATCCTTATCCTTACCACCACAGCTCCTCAACCTTACCTCAGTTTGCGCCCTACCCAGGCACCTCCGCTTCCCACCCGCTGTCCATGGCGCCGCCGCAGTATTCCGGGGGTATGACGAACCAGTTTCTGGGCCATCCGATGTACCACCAAGGCCAACGACTACCTGGGACGACTTCCGCGACGAAGGAGGCGAGGAAGAAGCGGATGGCGAGGCAGCGGCGCTTCTCCTCTCTCCACCAGCACCGCAACCACAACCAGCCGCTGCACCTGCAGCATGCTCATCATCCCGTCGGATCCACCGAGGGTGCAAACGGATCGTCTCATTCGAATACAAGGAATTGGGGTTTCTGGACCAGCATGTCCTCCTCGTCCCACCAGATGAACCACATGGCCGAGGCGCAGAATGCTTCAAACATGCAACAGACGCCGCCGCCGCCTGCGGCGCAACTGCCGCAGAGGCCTCAGCTTACCACCGCTTCGACCTCGGAGAAGCGCCAGGGTGAGAAGAACTTGAAGTTCCTGCTGCAGAAGGTGTTGAAGCAGAGCGACGTGGGTAGCCTGGGCCGGATCGTGCTTCCCAAAAAGGAAGCGGAGACCCACTTGCCGGAGCTGGACGCGAGGGATGGGATCTCCATCCCCATGGAGGACATCGGCACATCCCAGGTGTGGAACATGCGCTACAGGTTCTGGCCCAACAACAAGAGCAGAATGTATTTATTGGAGAATACAGGGGATTTTGTGAGGTCAAACGGGCTGCAAGAAGGGGACTTCATCGTGATCTACTCCGACGTCAAGTGCGGCAAATACATGATACGGGGAGTGAAGGTTCGACAGCCGGTGGAGGCGCGAGCACCGAGCAGCAGGAACACCGGGAAGGCGCATCAGAGGAGGAATGGCTTGGAGAAGATGGCTGGCGCATCAAAAATGAAAGGACGCAGTCTCATACATGATGATGCCGACAAGTACGACGACGACGACGACGACGACGACGACGATGTTCCACCTTCTATGCATGGCTAA
Protein Sequence:
  • >GSMUA_AchrUn_randomP18520_001|Musa_acuminata|B3|GSMUA_AchrUn_randomP18520_001
    MPSSCYIHSGWKWFLINPCEIGLENKISQTVECESRRKQGDVVFASDEVEEAMADHKVEGEEKVLGVGCGGDTAAGVDDIVLNIDGEDLIFSEDTFPCLPDFPCLSSPSATPSPSSASTLHAKNAVLSSCSSASSSSSSSSSSSSWSFLQSSEFADGLDILGDIDLFDLSIDPWDPPSLFHADEAKEGRLHGHGEGVPQQAQEEESSEELARIFLEWLRSNKDSISPEDLRSIKLKRATIECAARRLGRTKQGRTQLLKLILTWVQNNHLQRKRHRLPYSYDHQPRPFPISPNPNQLDYNCNPWSPYSMDPSTAATHPALLSAYAGGGNGEMGYPSATANPYPYHHSSSTLPQFAPYPGTSASHPLSMAPPQYSGGMTNQFLGHPMYHQGQRLPGTTSATKEARKKRMARQRRFSSLHQHRNHNQPLHLQHAHHPVGSTEGANGSSHSNTRNWGFWTSMSSSSHQMNHMAEAQNASNMQQTPPPPAAQLPQRPQLTTASTSEKRQGEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIPMEDIGTSQVWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVIYSDVKCGKYMIRGVKVRQPVEARAPSSRNTGKAHQRRNGLEKMAGASKMKGRSLIHDDADKYDDDDDDDDDDVPPSMHG