Gene Details:

  • Gene ID: GRMZM5G805685_P02
  • Gene Name: LOC100501773, ZEAMMB73_048292, Zm.33542
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Zea mays
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  NP_001183364.1  — B3 domain-containing protein
  • Swissprot:  Q53QI0  — Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
  • TrEMBL:  C4J5U3  — C4J5U3_MAIZE; B3 domain-containing protein
  • TrEMBL:  K4JRW7  — K4JRW7_MAIZE; ABI3VP1-type transcription factor (Fragment)
  • STRING:  GRMZM5G805685_P02  — (Zea mays)

Gene Ontology:

  • GO:0010073  — Biological Process — meristem maintenance
  • GO:0010358  — Biological Process — leaf shaping
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >GRMZM5G805685_P02|Zea_mays|B3|GRMZM5G805685_P02
    ATGGCGACGCACCACCTGGCCCAGGGCCACCCGCAGGCGTGGCCGTGGGGGATGGCCATGTACACCAACCTGCACTACCACCACCACCAGCAGCAGCAGTACTACGAGAGGGAGCACCTGTTCGAGAAGCCACTCACGCCGAGCGACGTGGGCAAGCTAAACCGCCTGGTGATCCCCAAGCAGCACGCGGAGAGGCACTTCCCCCTCGGCGGCGGCGACGGGAACGGGAACGAGAAGGGCCTGCTGCTGGAATTCGACGACGAGGCCGGCAGGCCGTGGCGGTTCCGCTACTCGTACTGGGTCAGCAGCCAGAGCTACGTGCTCACCAAGGGCTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTGCGCTTCGACCGGGTGCGCGGCGCCGGCGTCGGCGCCGCCGACCGTCTCTTCATCTGCTGCAGGCGCCGCGGCGAGAGCGCGGCGGCGGCGTCGGCGGCGGCGACTCCGACGCCGCCGCCCGTGGCGCCCGCGCTTAACGCCGGCGAGCAGCAGCAGCAGCAGCCGTGGAGCCCCACCGTGTGCTACAGCACGTCGGGGTCGTCGTACCCGCCCAGCCCGGCTAGCCCCTACGCCTACCACATCGACACGCCACACGCAGGCGCAGGCGAGGCGGACGCCAAGAGCAGCGGCGGCACGCCTACTACAGGTACAGCGCCGACGAGGAAGCTCCGGCTGTTCGGCGTCAACCTCGACTGCGGCCCGGAGCCGGAGACGGAGACGCCGACGGCGCCAATGTACGGCTACGGATACGTGCACCAGAGTCCCTACGCAGCAGTGCCCGCAGTTCCCAGCTACTGGGGCAGTTCATGA
Protein Sequence:
  • >GRMZM5G805685_P02|Zea_mays|B3|GRMZM5G805685_P02
    MATHHLAQGHPQAWPWGMAMYTNLHYHHHQQQQYYEREHLFEKPLTPSDVGKLNRLVIPKQHAERHFPLGGGDGNGNEKGLLLEFDDEAGRPWRFRYSYWVSSQSYVLTKGWSRYVKEKRLDAGDVVRFDRVRGAGVGAADRLFICCRRRGESAAAASAAATPTPPPVAPALNAGEQQQQQPWSPTVCYSTSGSSYPPSPASPYAYHIDTPHAGAGEADAKSSGGTPTTGTAPTRKLRLFGVNLDCGPEPETETPTAPMYGYGYVHQSPYAAVPAVPSYWGSS