Gene Details:

  • Gene ID: GRMZM2G125596_P01
  • Gene Name: LOC100272565, ZEAMMB73_484810
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Zea mays
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  NP_001140504.1  — putative B3 DNA binding domain family protein
  • Swissprot:  Q6Z1Z3  — IDEF1_ORYSJ; B3 domain-containing protein IDEF1
  • TrEMBL:  B4FPB4  — B4FPB4_MAIZE; B3 domain-containing transcription factor LEC2
  • TrEMBL:  K0DCT9  — K0DCT9_MAIZE; ABI47 ABI3VP1 type transcription factor (Fragment)
  • STRING:  GRMZM2G125596_P01  — (Zea mays)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0044212  — Molecular Function — transcription regulatory region DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >GRMZM2G125596_P01|Zea_mays|B3|GRMZM2G125596_P01
    ATGGGCCAGATGGGAGGACCCGACGGCGACGGCGACGGCGGCGCGGGCCCGCACCACCAGTACCACTACCAGGCGCTTCTCGCCGCCGTGCAGAACCCCAGCCAGGGCCTGCACCCCTTTCCCCTCCCCTTCCACGTGCCTCTGCACGCAGGAGCGGGAGCACCCGCCGCCGGACCAGGACCTGGAGCTGATGCTGATGCCTCCACACACAATGCCAATGCCGCTCACCACTCTCAACCTCCAAGAGGTTTCACCGATTGGAGCGCGTCCAACAGTGCCTTCGCCGCCGTTGCCTCACAGCCCGCACCTGCTACCACCAATACACCCTTCCATTACAACCTCTCCCAGTCTTATGCCCTATGGACCCATTACATGCTTAACAAGAATGTATCCTACTCTACTTACCCTACACCACATGAGGAGCATCCCCACCCATTGCGCCATACCCACATCCAGGAGAATCCCCACCCATTGCGCCATACCCACATCCCGGATAAGGATTCAGGTTGTGCATCTAGCCTTGGATTTGACTCTTTCACTACAATGTCCCTTGGACCAAATATTTGTTCCCACATGACGCCCATGGAAGGATCTATATCTGCCAAAGAACCCGAGAATTCAGAGGATTTGCCTGCAATAGTTAGGAGCAGTGATGAAATGGACACTAGAAACAGTGGCAAAGTTCATCGTGACACAGTTGGCACTCTTCCTGAGTCGAAGCAGAGCCATGAAAGTTGTGCTTCCGTGAATAATAAGTTCAACTCTGGAGAGTACCAAGTCATTTTGCGCAAGGAGTTGACAAAGAGTGATGTCGCAAATTCCGGACGAATTGTGCTTCCCAAGAAGGATGCTGAGGCTGGTCTTCCACCATTGGTGCAAGGGGATCCTCTGATACTGCAGATGGATGACATGGTGCTTCCAATTATATGGAAATTTAAGTATAGATTTTGGCCAAACAACAAAAGCAGAATGTATATCTTGGAAGCTGCAGGTGAATTCGTGAAGACACATGGCCTTCAGGCAGGGGATGCGCTCATTATCTACAAAAACTCCGTGCCTGGCAAATTTATTATCCGTGGGGAGAAGTCCATTCAGCAGACAAACCCCTAG
Protein Sequence:
  • >GRMZM2G125596_P01|Zea_mays|B3|GRMZM2G125596_P01
    MGQMGGPDGDGDGGAGPHHQYHYQALLAAVQNPSQGLHPFPLPFHVPLHAGAGAPAAGPGPGADADASTHNANAAHHSQPPRGFTDWSASNSAFAAVASQPAPATTNTPFHYNLSQSYALWTHYMLNKNVSYSTYPTPHEEHPHPLRHTHIQENPHPLRHTHIPDKDSGCASSLGFDSFTTMSLGPNICSHMTPMEGSISAKEPENSEDLPAIVRSSDEMDTRNSGKVHRDTVGTLPESKQSHESCASVNNKFNSGEYQVILRKELTKSDVANSGRIVLPKKDAEAGLPPLVQGDPLILQMDDMVLPIIWKFKYRFWPNNKSRMYILEAAGEFVKTHGLQAGDALIIYKNSVPGKFIIRGEKSIQQTNP