Gene Details:

  • Gene ID: Glyma.11G197900.2.p
  • Gene Name: GLYMA_11G197900, LOC100789848
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Glycine max
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_006591264.2  — B3 domain-containing transcription repressor VAL1
  • Refseq:  XP_014619648.1  — B3 domain-containing transcription repressor VAL1
  • Refseq:  XP_014619649.1  — B3 domain-containing transcription repressor VAL1
  • Refseq:  XP_014619650.1  — B3 domain-containing transcription repressor VAL1
  • Refseq:  XP_028189970.1  — B3 domain-containing transcription repressor VAL1-like
  • Refseq:  XP_028189971.1  — B3 domain-containing transcription repressor VAL1-like
  • Refseq:  XP_028189972.1  — B3 domain-containing transcription repressor VAL1-like
  • Swissprot:  Q8W4L5  — VAL1_ARATH; B3 domain-containing transcription repressor VAL1
  • TrEMBL:  A0A445I4E8  — A0A445I4E8_GLYSO; Uncharacterized protein
  • TrEMBL:  K7LR55  — K7LR55_SOYBN; Uncharacterized protein
  • STRING:  GLYMA11G31234.1  — (Glycine max)

Gene Ontology:

  • GO:0010030  — Biological Process — positive regulation of seed germination
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:2000034  — Biological Process — regulation of seed maturation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005739  — Cellular Component — mitochondrion
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Glyma.11G197900.2.p|Glycine_max|B3|Glyma.11G197900.2.p
    ATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCTCAACTATGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGACCGGTTATCTGCCTACGAGAATTCAGTTTTCTGTAATAAATTCCACCGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACAGTGGATGCATAGTATCTAGATCTTTGTTCGGGTATCTTGACTTTGGTGGCATAGGTTGTGTCAGCTGTGTAAATACTACCCAACTTAGTATGATGAGGAATACTGAAAATCCAAATGTGTCAGTTTCGTCAATAAAAAATAATGCGAGTGATCGGCATTCTGCTCATTTTGATGGCAGACTGCTTGTGGGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCACTGGAATCATGCTCAAAGTGATGGCATAATTGCACATCATGGGCAAAACAACCAAGAAGCCAAGTGTTCATTCAGGGAAGGGGACATTGGATTTTCAAATGTGAGGAAACCATCCGTTCAGTCATTGACATTTGCTACGTTAGAAAATAATAGGTCAACATGGGAGATTAAAAACATGCATGAATCAAATGCACAGCCATCTTTCAGTATGTATCTGGGAAATGCATCAGGGAACGACTCCGTCCCACCTTCTGCTGGAGAGGCTGTAGAAGGAAGACTCGAGGGAAAAACATCTCCTCCCTTTCAAAGATCTCGCCCTATATGTCCTAAACCATTGAAGAGTGGGCTTACCATGAATGTGGAGACAGATAAAGGTGCAATTTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGGGGCAAGAATCAGTTACTTCCCCGATATTGGCCGAGGATTACTGATCAAGAGCTGGAGCGATTGGCTGGAGATTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTAGTTATGGGTTTCAGAAAAGCATCAAATTCTACAGATACACAGGATGCCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCATCTCTTCTGGTACTGAGAATCTGCCATCAGGAAGTAATCATGCCAATCTTCTCCATTCATTGACAGGGAATGTTGAAACTCACTTAAATGGACATACAGAACATCTGCACTTGGGTACTGGAACTGCTGGATTGCTTAAAACTGAAAATAATGAGATGACAAACAGCAGTTCACCACAACAACAAATTTCGGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTAATTGATAATGAAGATGCCATGGAGTTGAAACTTACATGGGAAGAAGCACAAGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAACATTGTCACAATTGAGGACCAAGTATTCGAAGAATATGATGAACCCCCTGTTTTTGGAAAGAGAACTATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAGTGTGATGATTGCTCTAAATGGCGAAAGCTGCCCGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATTCAAGCAGGTGTTCATGCTCTGTGCCGGAGGAGTTAAGTTCAAAGGAATTAGAAAATCTTCTGAAAACCAACAAAGATTTTAAAAAGCGGCGAATTGCAGAAAGCAGCAAGTCAATCCAAGAACACGAGGCTTCTGGCCTGGATGCCCTTGCCAGTGCAGCTGTCCTTGGAGAAAATCTTGTTGACACTGCCGAGTCATCAGCTGGAGCCACCACCAAACATCCTAGACACCGTCCCGGCTGCTCTTGCATCGTATGTATTCAGCCACCAAGTGGAAAGGGGAGGCATAAGCCAACCTGTACGTGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTAAGGAAGAAGAAACGGCAATCTGAACGCGAAGCAGATACTGCCCAAAAAGACCAAACTCTCCTGAAAGATGAGCCGGATACCAACGGAGCACCGAGGGACGATACAAGTCGGTTGGAGAAAGAGGTGGGACTAAACAAAAGTCAACATCAGGTGGGTGAGTCCAGTACTGGACAGATCGATCTGAATTCTCATCCCAACCGCGAAGACATGCAAGTGGAAACCACAGGACTTAACATGTCTAGTCATCTTGAACCAGCAACAAACCATACAGTAGGAGAATTTATGGACAAAAATGACCTAAGAAGAAGCTTCAATAATGAAGTGCAGACTGGTCAGAATTCTTCTTTGCACACTCCTCCTCAATCTAGTGGAGAAGGTCAGAGATACTTCTCTGATGGAAGATGCTTTGCATCCATTGTGTGGAACCAGGAAAGAAAGGATGAGGTACATAGTCAACCCAATCAGAGTCAAAACAATCTTTCTTAA
Protein Sequence:
  • >Glyma.11G197900.2.p|Glycine_max|B3|Glyma.11G197900.2.p
    MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILDRLSAYENSVFCNKFHRQQTGWRECNFCNKPIHSGCIVSRSLFGYLDFGGIGCVSCVNTTQLSMMRNTENPNVSVSSIKNNASDRHSAHFDGRLLVGGVDEGKLMQFCKIIEASESSHWNHAQSDGIIAHHGQNNQEAKCSFREGDIGFSNVRKPSVQSLTFATLENNRSTWEIKNMHESNAQPSFSMYLGNASGNDSVPPSAGEAVEGRLEGKTSPPFQRSRPICPKPLKSGLTMNVETDKGAISQSRVARPPADGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGTISSGTENLPSGSNHANLLHSLTGNVETHLNGHTEHLHLGTGTAGLLKTENNEMTNSSSPQQQISVLEKKRTRNIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVKPNIVTIEDQVFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDSSRCSCSVPEELSSKELENLLKTNKDFKKRRIAESSKSIQEHEASGLDALASAAVLGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADTAQKDQTLLKDEPDTNGAPRDDTSRLEKEVGLNKSQHQVGESSTGQIDLNSHPNREDMQVETTGLNMSSHLEPATNHTVGEFMDKNDLRRSFNNEVQTGQNSSLHTPPQSSGEGQRYFSDGRCFASIVWNQERKDEVHSQPNQSQNNLS*