Information report for Gh_D12G0645
Gene Details
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Functional Annotation
- Refseq: XP_016735008.1 — PREDICTED: uncharacterized protein LOC107945492 isoform X1
- TrEMBL: A0A1U8NAQ4 — A0A1U8NAQ4_GOSHI; uncharacterized protein LOC107945492 isoform X1
- STRING: Gorai.008G071200.1 — (Gossypium raimondii)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_34094_BGI-A2_v1.0, Cotton_A_34095_BGI-A2_v1.0, Cotton_A_35970_BGI-A2_v1.0
- Nicotiana tabacum: XP_016472695.1, XP_016472694.1, XP_016472693.1, XP_016472692.1
- Prunus persica: Prupe.7G039600.1.p
- Ricinus communis: 29851.m002491
- Ziziphus jujuba: XP_015890081.1
Sequences
CDS Sequence:
- >Gh_D12G0645|Gossypium_hirsutum|B3|Gh_D12G0645
ATGTTTACACCAAAGACACCCCATTTCTTCAAGATCATTTTAGATGCCAATATTCGAGATAAGAAGCTTGAGATTCCTGGAGAGTTTGTGAGAAAATATGGAAATGGGTTATCAAATTCAGTGTTATTAACTGTTCCAAGTGGTGATACATGGCATGTTGAGCTGACAAAATCTGATGGTATTGTTTGGTTGCAAAATGGATGGCAAGAATTTTCTGAGTATTTCTCTCTCAAGTATGGGCATCTCCTGGTTTTCAAATATGAAGGTAATGGCAAGTTTCTGGTACTCATATTTGATACGAGTGCATCAGAGATTGAATATCCATGCAAGAGCCATATTGAAGATCAGAAGAGTGATGATCAAATGTGTCTAAAACCTGTCAAGGAAGAACCTAAAGATGATGTTTGTGATAAACCCTTGCATGGGACTCCTTCATGCAAGGAAACTAAGAGGAAGAAATCACGATCACTATGTTCTAACACAGAATATCTATGCAAGAGCTATATTGAAGATCATAAGAGTGATGATCAGTTGTGTCTAAAACCCGTCAAGGAAGAAGCTAAAGATGGTGTTTATGATGAAACCTTGTATGAGACTCCTCCATGCAAGAAAGCTAGGAGGACTAAATCACAATCACAATGTTCTAAAATTGAATATCCATGCAAGAGCCATATTGAAGATCACAAGAGTAAAGATCAAGTGAGTCTAAAACCCGTCAAAGAAGAAGCTAAAGATGATGTTTGTCATAAAACCTTGTATGAGACTCCTCCATGCAAGGAAACTAGGAAGAAGAAACCGCAATCACAATGTTCTAAGCCTCGAAAGAAAATGAAAACTGCTCAAAAAGACAAAAATAGAAAAGATTGTGAAGATGCGTCAACTGATGAAGAAGGCCTGCAAACCAAGGTTCCTAGAGATGGACGTGCATTTAGAGCCATCGAATATGATAAAGCTCTTCAAAGAGCCTTTTCCTTTGAATCAGAGAATCCATTCTTCCTGGTCACAATGCAGCCTTCATACATTAATCCTGGTCGAAAAATGTGCATACCAAAGAACTTTACTATGAAGTTCCTGACAAGAGATCTTGGTGATTTAACACTTTGCACTTCGGATGGGAGAACTTGGTCTGCTCAGTACTTGTGCTATATGACCAGAAACAAGTATACAAAAGCAACCATCCATATTGGTTGGAGGCAATTCATGCTGGACAACAATTTGGAAGCTGGTGATGTTTGTGTTTTTGAGCTGATTTCGCAAACAGAAATCATGTTGAAAGTAATAATTTACCGTGTTCGTCAAGATGCAAGTTGTAGTTCTCCTTTGGGTGGAATAAACTCTTTGGAAAATGGTGATAATGTAAGCTCATCAACACCGGGAAGCACAGAGTCTAAGCATCATTGCTCGATTCGATCACTAACACCCCATGAGAAAGCAAGAGCAATTCAAAAAGCCAGTAATTTTAAATCTAAAAACCCTTTTTTCAAGGTTGTAATGCAACCCAGATACTTGACCATAAGATGTAGCCTGAGTATACCATACAAATTTGTGAACCAATATCTCGATGAAGAGAAGGAGGAAGCCATCCTTGAAGTTTCTGATGGGCGAACCTGGGTTGTCAAGTTTGCTGTTAAAGTGGTCACTGGTGGACAACATAAAGCTGAATTCTCTCATACATGGAGGGCTTTTGCACGGGACAATAACTTGGAAGTTGGTGATGTATGTGTCTTTGAGCTGATTAACCGCAATGAAAATTCATTCAAGGTCTCCATCTTTTCAGAGGCACCAGGAGCTAATTCTTCTCTGTCACTGCAAGCTCATGATGTGAAAGCCAGTCACGTTGCATCCAAAAATTGCTCGGTACCTAAAATTGAAGCTGATGATGATTTTGGCAATTGTTATGCTGGAAATCCTGGCCCTGCTGCCCAACCCACTGCCATAGGACATCAAGAAAATGAAGAGGAAGTTAATCCTACTGATGATGCTATAGCCAGTCAAGTTGCATCTAAAGATTTCTTGGTGCCGAAAGTTGAAGTTGATGATGATTTTGGCAAGTGTTATGCCGGAAATTTTAGCCCTGCTGCCCAAATCACCACCACAGGATATCAAGAAGCTGAAGAGGAAGTCAAACCTAGTAAGTATAATTCCAATGTCCTCGAACACAAACAATTGGAATATATGAACTTGTCAAAATTTATATAA
Protein Sequence:
- >Gh_D12G0645|Gossypium_hirsutum|B3|Gh_D12G0645
MFTPKTPHFFKIILDANIRDKKLEIPGEFVRKYGNGLSNSVLLTVPSGDTWHVELTKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKFLVLIFDTSASEIEYPCKSHIEDQKSDDQMCLKPVKEEPKDDVCDKPLHGTPSCKETKRKKSRSLCSNTEYLCKSYIEDHKSDDQLCLKPVKEEAKDGVYDETLYETPPCKKARRTKSQSQCSKIEYPCKSHIEDHKSKDQVSLKPVKEEAKDDVCHKTLYETPPCKETRKKKPQSQCSKPRKKMKTAQKDKNRKDCEDASTDEEGLQTKVPRDGRAFRAIEYDKALQRAFSFESENPFFLVTMQPSYINPGRKMCIPKNFTMKFLTRDLGDLTLCTSDGRTWSAQYLCYMTRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQTEIMLKVIIYRVRQDASCSSPLGGINSLENGDNVSSSTPGSTESKHHCSIRSLTPHEKARAIQKASNFKSKNPFFKVVMQPRYLTIRCSLSIPYKFVNQYLDEEKEEAILEVSDGRTWVVKFAVKVVTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRNENSFKVSIFSEAPGANSSLSLQAHDVKASHVASKNCSVPKIEADDDFGNCYAGNPGPAAQPTAIGHQENEEEVNPTDDAIASQVASKDFLVPKVEVDDDFGKCYAGNFSPAAQITTTGYQEAEEEVKPSKYNSNVLEHKQLEYMNLSKFI