Information report for FANhyb_rscf00001271.1.g00002.1
Gene Details
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Functional Annotation
- Refseq: XP_004290234.1 — PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
- Swissprot: Q01593 — ABI3_ARATH; B3 domain-containing transcription factor ABI3
- TrEMBL: I6V4V5 — I6V4V5_ROSCN; ABI3
- STRING: XP_004290234.1 — (Fragaria vesca)
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >FANhyb_rscf00001271.1.g00002.1|Fragaria_x_ananassa|B3|FANhyb_rscf00001271.1.g00002.1
ATGGATGGAGTGCAAGTTCAAGTCCACGGTAACCACCACCAAGATCTGCATGCAGCGGATCACCACGGCCAGCATCTCATCGGCAAAGAAGAGATGCGAAACGATTTCGGAGAAGAAGATGGAGACGCCGCTGATCTATGGCTTGATAATGACCAAGACTCTCTTCTCGCTGACGGCGCCGGTGAAGACATGTCGACGTCACCCTCGGCGTCTTCTTCTTCCTCCGCCGCTTCCTGGGCTGTTCTCAAGTCCGATGCTGAGGATAATCATTCTCATGATTATCAGCAGCAACAAGACCACAACAACAACACTCACTACTCTCATAACGATTCTGCTGATGCATATCCGGCTGGGGCGTTGTCCCCCACCCCCTCTATGGAGATCTCTCAGCAGTCGGATCTCGGAATGGAGTGCATGGACATGATGGAGACTTTTGGGTACATAGATCTGTTCGAAGGCAACGAGTTCTTCGACCCTTCTTCCATTTTCCAAAACGAGAACCCAATAATGGACCAGTTTCAACCGCAGGAACAACCTTCTCAGGCGCATGAAGAGAATCAAACCCCACACCCACAAGAGAACATGATCATGGGAGATCAGAGCATGAAGGTCCTAGAGGGGGGATCCTTATACCAACAGAGCAACAAGATGCCGGAAGACGACATGGCGTCTGTGTTCTTGGAGTGGCTTAGGTCTAACCGAGAGACGGTTTCTGCGGAGGATTTGAGGAGCGTGAAGATCAAGAAGTCAACAATCGAGTGCGCTGCCAGGCGTTTGGGTGGAGGAAAAGAGGCGATGAAGCAGTTACTCAAACTAGTGCTTGAATGGGTTCAAACTAATCATCTCCAAAAGAGGCGCGGTAGTAGTACCAAAGACTCGGCGATACAACACTATGCTGTAGACCCATTTCAAAGCGCCAACCCTAACCCTAACCCTAGTCTTAACCCTACGCAAAATCCTCCCATATCATCGCCGTGGATGGCGTCTCCCCAGTATGATGCGGCGGCGCCTGTATTAGTCCCGACTCCGTCAACTCCGATGATGGGGTTCATGGGTCAGGACCCGTTTGGAAGCGGGCCGGGTTACCAGCAACCGAATTCAGAGCAATACCAGCATCAAATGCTGGAGACTGCACCAACCTGGCCACCTTCATCTCCATTTATGGGCAACAATTATGGGTCTTTCCCGGATACTAATGTCCAACTAGCACCGACGAGTCAGCATCAGCAACAGTTTTCCGGTTACGGAGGGCAGTATGGCCAGTATCAGTATTTTGGAGGGCATTCAGGTGAGCCTCAGCTGGTGAGGTTAGCCTCTTCAGCCACTAAAGAGGCTAGGAAGAAGAGGATGCAAAGGCAAAGAAGGACTTTGTCACACCATGGAAGGCATCACGGCCATCAACAGAATCAGCATCCTAATCAGATGCTGGATCAGAGGCTAGTTGGGAATATTGATCCTAATTGCACTACTGCCGCAATGGGCAATCCCTCTGCAGCTAACTGGTTTTATTGGCCCACAGCGGCTGCCGGTGGTCCTGCTCCTGCTGCCACCCCGGCAATGGTACAGAATATGACTCCCGAGGCAGCACCATCAGTGCTTCCGGTTGATCGTCCGGCCAGTCAAGGGCAGAATTATAATCTGGGCCGGATTAATGCGCAGGAAAGGCGACAGGGATGGAAACCTGATCAGAATAAGAATTTGAGGTTCCTTCTTCAGAAAGTGTTGAAGCAAAGTGATGTAGGCAACCTTGGAAGAATTGTTTTGCCAAAGAAAGAAGCTGAAACCCATCTGCCTGAACTAGAGGCAAGGGATGGAATTTCGATTGCAATGGAAGACATCGGGACTTCTCGTGTATGGAATATGCGCTATAGGTACTGGCCCAACAACAAAAGCAGGATGTATCTCCTTGAAAACACAGGAGATTTTGTGAGGGCAAATGGGCTTCAAGAAGGGGATTTCATAGTCATCTATTCAGACATCAAGTGTAACAAATATATGATACGAGGAGTGAAGGTACGGCAAGCTGGGACGAAATCAGAGACCAAAAGGCCAGGAAAGTCACAAAGGAACCAGCATGCAAGCACCCCATCTGGCAACAATGGCTCTTCATCTAAGAAACAGTAA
Protein Sequence:
- >FANhyb_rscf00001271.1.g00002.1|Fragaria_x_ananassa|B3|FANhyb_rscf00001271.1.g00002.1
MDGVQVQVHGNHHQDLHAADHHGQHLIGKEEMRNDFGEEDGDAADLWLDNDQDSLLADGAGEDMSTSPSASSSSSAASWAVLKSDAEDNHSHDYQQQQDHNNNTHYSHNDSADAYPAGALSPTPSMEISQQSDLGMECMDMMETFGYIDLFEGNEFFDPSSIFQNENPIMDQFQPQEQPSQAHEENQTPHPQENMIMGDQSMKVLEGGSLYQQSNKMPEDDMASVFLEWLRSNRETVSAEDLRSVKIKKSTIECAARRLGGGKEAMKQLLKLVLEWVQTNHLQKRRGSSTKDSAIQHYAVDPFQSANPNPNPSLNPTQNPPISSPWMASPQYDAAAPVLVPTPSTPMMGFMGQDPFGSGPGYQQPNSEQYQHQMLETAPTWPPSSPFMGNNYGSFPDTNVQLAPTSQHQQQFSGYGGQYGQYQYFGGHSGEPQLVRLASSATKEARKKRMQRQRRTLSHHGRHHGHQQNQHPNQMLDQRLVGNIDPNCTTAAMGNPSAANWFYWPTAAAGGPAPAATPAMVQNMTPEAAPSVLPVDRPASQGQNYNLGRINAQERRQGWKPDQNKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDIKCNKYMIRGVKVRQAGTKSETKRPGKSQRNQHASTPSGNNGSSSKKQ