Information report for FANhyb_rscf00000046.1.g00015.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_011460287.1 — PREDICTED: B3 domain-containing protein Os07g0563300
- Swissprot: Q0D5G4 — Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
- TrEMBL: A0A2P6Q3L2 — A0A2P6Q3L2_ROSCH; Putative chromatin regulator PHD family
- STRING: XP_004293496.1 — (Fragaria vesca)
- GO:0048366 — Biological Process — leaf development
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >FANhyb_rscf00000046.1.g00015.1|Fragaria_x_ananassa|B3|FANhyb_rscf00000046.1.g00015.1
ATGTCGTCGTCGGCTGCGTCTTCTTCTTCCTCCAAGTGCTGCTACAATTCCGAGTGCGGCGAATTGAAGCCGGAGCACCCGAAGAAGGCCTGGCGCCTCCGCACCGGTGACTGCGCCGAGCTCTGCGACCGATGCGCTGTCATTTATGAAGAAGGAAGATTCTGTGAGACTTTCCATGTGAAAGCTTCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGCGTTCATTGTGGATGTATTGTTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGTGTAACATGTGCAAGGAAACATATTGTTCTGACATCAAATCCAGCATGGGCACCAACTTTGTTATTTCATTCACCATTTCCTGAAAGACCGAAGGACATGTCTGGAAAAAATTGGACTCAGTTGGCTGGATCTGGTCCTGTACCATGGAGGCAGGCACCTAGTTTATTCAATACTTCAATTTCTTCACCTGATTTGCATACGAGGGTGCCATATGGTATTGACGGTTCAATGGGAATCAATAAACTCAATGCCGGTGAAAGAATTTCAGTCCATCCCTTGGAAAAGAAGAAAGCTGAGGACTTTTCTGAAAGGCTAATGAAAGTGAATCTTGCAATTGGCACACCAGTTACTTTTGAAAATGGAAATTCAGGAAATAAGCACATGGAGCAAAGTAGGTCATGTTTAAATGTATCTCAACAGCCTATCTCTTTGAAGGAGGAACAATCTACCCCACAGTTTGTCCTGTCTGTCCCTTATGTATCAGCAAGTGATACGAATGGTCAAACAAATGGTCAAGTGGTGGTTACGGGAACCAATTTGCAGCCTGCCCTTCCTATGGCAAATCAATTTCATGGTATTCATGGTGCTTTATACAATGGAGTTGAATTGTCCGGTGATACTCAGATCCGCTATGCAAAGTCTGGTCTAGATGCGCGAGGAAGACTTTCCCGGTACTGGCCTAGGTTTACTGATAAAGAGCTACAGCAAATTTCTGGAGACTGTTGTGATGTATGTAGTATAAATTATGATTGTCTATCCTTGACCATTTTAAGTTCAAATTCTGTCATTACTCCACTATTTGAGAAAATGTTGAGTGCAAGTGATGCTGGGAAGATTGGACGTCTGGTATTGCCGAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCACCCTGAAGGGTTACCACTTACAGTCCACGATTCACTAGGCAAGGGATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCAGGCGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAAGGCTCTAACTGCCCCATCTGATCAGGAAAATGATACAGACAAGATGGGGAATGGAGCTTCTGCCAATGCAGCTGTTGGTATAACAGATACCAAATCTGGTGAAGTTTTTTCAAATGCTGAATTGGCAGTTCGTAGTACAGTTGCCAAAGGTGATAAGTCAGGTTACGTATCAAAAGATGTAGTGGGAGCTAAATCTTTGATCTCTCGGAAAAGGAAAAACAGCATCTTGGGTTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGACCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAAACATGTTCCTACTGTTGTCGTGATTGAAGGGTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGAAACTTTTCACTATGGGAAGTAAAGGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGCAAGTGGCGCAAATTGCCTGTTAATGCTCTTCTTCCCTCAAAGTGGACTTGCTCGGATAATTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAATAGAAGAGCTTGAAGATCTGCTTCCCCGTAACACAGTTGCTCCTAAGAACGTGAAGGACTGCCCACCAATATCCGTCCTAGAGCTCCACATTAGTTTTCTTTGTGAGAAGATTCAATGGGCACAATGTGAAGTCTGTTGCAAGTGGCGCAAATTGCCTGTTAATGCTCTTCTTCCCTCAAAGTGGACTTGCTCAGATAATTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAATAGAAGAGCTTGAAGATCTGCTTCCCCGTAACACAGTTGCTCCTAAGAACGTGAAGGCTGCTAAACAGGACCCAGATAGCATCGAAGCTTTGGAGGGGCTTGATACACTTGCAGACCTTGCTATCTTAGGGGAGGGTGAGTCACTCCCATCATCAGCTCAGGCCACAACAAAGCATCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCCAGTGGGAAGGGTCCTAAACACAAGCAAACATGCATCTGCAATGTGTGCTCAACAGTAAAGCGCCGCTTCCGCACGCTAATGATGCGGCGTGAGAAAAATAAGTCGGAGAAAGAAGCAGAAACCACACGAAAAAAGCAGCAGCAACAGCAATTTCAAGACGATGACACCCTCTTAAGTGGTAACACAGGAAGTAGCAGTCCGAACATCCGAGTGGAGGTCCTTGACCTTTCTGATGATGACTTCAACAGGACGAAATCTCCAACTCCTCCTTATAAAGGCCAAATTGACCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGTATGATAAAGTTGCTCCAAGATGCGACAGAGAGGTATCTCAGGCAGCAGAGGCAGAGTTTATCAATCTCTGTTGGCGGTGAAAGATCATTGGGCAACAAGTCACAGCTAGCTGGAATTGAAGCAGGAGGAGAACCACTTGGCTACATTGCAATTCTTGGGAACAACAATCATGACGGTGGCAATGATCATCCTGCAACTTTATCCATCAATGCATCAGCATCCATGACAGCGACGTGA
Protein Sequence:
- >FANhyb_rscf00000046.1.g00015.1|Fragaria_x_ananassa|B3|FANhyb_rscf00000046.1.g00015.1
MSSSAASSSSSKCCYNSECGELKPEHPKKAWRLRTGDCAELCDRCAVIYEEGRFCETFHVKASGWRCCESCGKRVHCGCIVSAQAFTLLDPGGIECVTCARKHIVLTSNPAWAPTLLFHSPFPERPKDMSGKNWTQLAGSGPVPWRQAPSLFNTSISSPDLHTRVPYGIDGSMGINKLNAGERISVHPLEKKKAEDFSERLMKVNLAIGTPVTFENGNSGNKHMEQSRSCLNVSQQPISLKEEQSTPQFVLSVPYVSASDTNGQTNGQVVVTGTNLQPALPMANQFHGIHGALYNGVELSGDTQIRYAKSGLDARGRLSRYWPRFTDKELQQISGDCCDVCSINYDCLSLTILSSNSVITPLFEKMLSASDAGKIGRLVLPKKCAEAYFPPISHPEGLPLTVHDSLGKGWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDIVTFSRLEPGGKLVMGCRKALTAPSDQENDTDKMGNGASANAAVGITDTKSGEVFSNAELAVRSTVAKGDKSGYVSKDVVGAKSLISRKRKNSILGSKSKRLRIEKEDLIELKITWEEAQGLLRPPPKHVPTVVVIEGFEFEEYEDGPILGKPKLFTMGSKGEKIQWAQCEVCCKWRKLPVNALLPSKWTCSDNSWDPDRSLCSAAQELTIEELEDLLPRNTVAPKNVKDCPPISVLELHISFLCEKIQWAQCEVCCKWRKLPVNALLPSKWTCSDNSWDPDRSLCSAAQELTIEELEDLLPRNTVAPKNVKAAKQDPDSIEALEGLDTLADLAILGEGESLPSSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCICNVCSTVKRRFRTLMMRREKNKSEKEAETTRKKQQQQQFQDDDTLLSGNTGSSSPNIRVEVLDLSDDDFNRTKSPTPPYKGQIDLNIQPEREEDLSPGSDSGGMIKLLQDATERYLRQQRQSLSISVGGERSLGNKSQLAGIEAGGEPLGYIAILGNNNHDGGNDHPATLSINASASMTAT