Information report for evm.model.supercontig_2.296
Gene Details
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Functional Annotation
- Refseq: XP_021909906.1 — B3 domain-containing transcription repressor VAL1
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A061GYW3 — A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
- STRING: evm.model.supercontig_2.296 — (Carica papaya)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >evm.model.supercontig_2.296|Carica_papaya|B3|evm.model.supercontig_2.296
ATGGGGAAGTTTGATTTTGAGGGAGGTGGGGGAAGTCAAATGGGGTCAAAGATTTGCATGAACACGTCATGTGCGACGGCAACGACTCATGAATGGAAGAAAGGCTGGCGTCTGGGATCTGGCGGATACGCTGATCTCTGCTTCCGTTGCGGATCTGCCTATGAGAGTTTCATTTTCTGTGATACATTTCACTCAGAAGAATCTGGTTGGAGGAAATGTTACTTTTGCAGTAAGCGTCTTCACTGTGGATGCATAGCCTCAGAGTCTTTAGTTCAGCTCCTAGATTATGGTGGTGTTGGGTGTACTGGTTGTGCAAAGAGCTCTCAGTTGAATTTGGTAAGGAGAAATGAAATATCTCATGGATTTGGTGGATTAACGATAAATACTACCAATAATGTACAAGTCATCGGTGCTGAAAATGGTAATAATGTTGATGGAGAAAGACTGTCTCAGTTGTGCAAAATTATGGAGGCTAATGAACCTGACCTCTTTCCTCAATCTCAAAGAGGTGATACAAATGTATCTTTCAATCAAGACAGGCAAGGAGAGTTCATGCATCCAATTGGGGAAATTGGCACAAGTTTATCAAATGCAATTAAATCATCAAGTGGATCATCTAAGTTTGCCAAACCAGACAATAGTAGATCAATCCTAGACACTAGAAATATGTGTGATTCACTAGCTCAACCATCTTTAAGTATGACTTTGGGAGCACCATCAGGAACCTTAAGCCGGGGATTGCCCTTTTCAAGTGGGATTGCTGATGGCCAGGAAGAGAGCAAAGGTCCTTCTTTTCAGCAGGGGCAACAATCTCGCCCTATATTGCCAAAACCCTCTAGATCTAACACTGCACTTTCAGATACGAACAAGAGTGCAGTTCCTCATATGCGAATTGCAAGACCTCCTGTTGAGGGGCGAGGGAAAAATCATTTACTTCCTCGATACTGGCCGAGGATTACCGATCAAGAACTGCAGCAGCTATCTGGAGATTTGAATTCAAATATTGTGCCACTCTTTGAGAAGGTTCTGAGTGCCAGTGATGCTGGCCGTATTGGTCGTTTGGTTCTTCCAAAAGCATGTGCAGAAGCATATTTTCCTCCTATTAATCAATCAGAGGGCCTTCCTTTAAAGATTCAAGATGTTAAGGGTAAAGAGTGGTCATTTCAGTTCAGGTTTTGGCCCAATAACAATAGTAGGATGTATGTTTTGGAGGGTGTAACTCCTTGCATACAGTCTATGCAATTGAAGGCAGGTGATACTGTAACATTTAGTCGCATAGATCCCAGCGGAAGACTTGTTATAGGTTTTCGAAAGGCAACCAACAACGAAGACCAGCTGGACTCCCGAACATCTGCCATTCCTAATTGCACTTCTTTGAAGGAGACTTCATATAATGGTGGTATTGAGAGTTTGCATACAGTAAGTGGTTACTCTGGTATTGTTGGGACAATGAAAGGAGGAATGGACCCTCACATAAATGCCCTATCTGAACATTTGAGTTCAGCTGATATTGATATTGGTTGGCACAAAAATGAGAGCCATGGAGACAGGAATGGGGATTCATCACATCAATCAATTCTGAATGCTGAGAAGAAGAGGACTCGTAATATTGGGTCCAAAAGTAAGAGGTTGCTGATGCACAGTGAAGATGTGCTGGAGCTAAGACTTACATGGGAGGAAGCACAGGACTTGCTTCGTCCTCCCCCTACTAGCAAGCCAAGTGTTGTCACCATTGAGGACCTTGAATTTGAAGAATATGATTATGGTAGAAGTGACAAAATCTTGAAAGAAAAATATCTTCCGCTAGAGGATCAGTCCACTGATTTCAAGAGGAGAAGAAATGCAGAAAGCCAGAAGGCAGACCAAGAACATGAACCTTCTGGCTTGGATGCTCTGGCCAGTGCTGCTGTTCTAGGAGACAACTTGGGTGAATCGGGGGAACAATCTGTTGGAGCTACCACCAAACATCCCCGTCATCGCCCTGGCTGTACATGCATTGTGTGCATTCAGCCCCCAAGCGGAAAAGGAAAGCATAAGCCCACATGCACATGCAATGTGTGCATGACTGTGAAGAGGCGATTCAAGACTCTCATGTTGCGCAAGAAGAAACGACAATCAGAGCTTGAAGCAGAAGCTGCTCAAAAAGAGCAAAATGATAACCTGAATGAATCAGAACTTAATGCAATGACAGGGTACCCATTGCACAAGCATCTTTCAGATAATGAAGGAAGCCATAACAGAATTCAGGGTGATGTGGCTGAGAGCAGCAATTCAATTGACCTGAATTGTCATCCGCAACGAGAAGAGATGCAACTTGAGGAACCTCCAATAAGCCTAATGAGCCTTCTGCAAGCAGCTAACATAGAGAATCTTATGAAGCAGATGACTGAGCAACAGGCTAGTCTTGGCCCTTGTTTACTCTCACCGGCTAATGGCCAGAGCGAGAGACACACACCAGCAGAGAATGGTTTTGTTGCATCTCTAGGACGCGTAGGTGATGGTAGAAGTGATGAAGCATTGCGAGCTGCCCAGAGCTTAGACAGGAGCAGTATTTCTTGA
Protein Sequence:
- >evm.model.supercontig_2.296|Carica_papaya|B3|evm.model.supercontig_2.296
MGKFDFEGGGGSQMGSKICMNTSCATATTHEWKKGWRLGSGGYADLCFRCGSAYESFIFCDTFHSEESGWRKCYFCSKRLHCGCIASESLVQLLDYGGVGCTGCAKSSQLNLVRRNEISHGFGGLTINTTNNVQVIGAENGNNVDGERLSQLCKIMEANEPDLFPQSQRGDTNVSFNQDRQGEFMHPIGEIGTSLSNAIKSSSGSSKFAKPDNSRSILDTRNMCDSLAQPSLSMTLGAPSGTLSRGLPFSSGIADGQEESKGPSFQQGQQSRPILPKPSRSNTALSDTNKSAVPHMRIARPPVEGRGKNHLLPRYWPRITDQELQQLSGDLNSNIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPINQSEGLPLKIQDVKGKEWSFQFRFWPNNNSRMYVLEGVTPCIQSMQLKAGDTVTFSRIDPSGRLVIGFRKATNNEDQLDSRTSAIPNCTSLKETSYNGGIESLHTVSGYSGIVGTMKGGMDPHINALSEHLSSADIDIGWHKNESHGDRNGDSSHQSILNAEKKRTRNIGSKSKRLLMHSEDVLELRLTWEEAQDLLRPPPTSKPSVVTIEDLEFEEYDYGRSDKILKEKYLPLEDQSTDFKRRRNAESQKADQEHEPSGLDALASAAVLGDNLGESGEQSVGATTKHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMLRKKKRQSELEAEAAQKEQNDNLNESELNAMTGYPLHKHLSDNEGSHNRIQGDVAESSNSIDLNCHPQREEMQLEEPPISLMSLLQAANIENLMKQMTEQQASLGPCLLSPANGQSERHTPAENGFVASLGRVGDGRSDEALRAAQSLDRSSIS*