Gene Details:

  • Gene ID: EcC054811.230
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Eucalyptus camaldulensis
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_010050479.1  — PREDICTED: putative B3 domain-containing protein At4g03160
  • TrEMBL:  A0A059CMH9  — A0A059CMH9_EUCGR; Uncharacterized protein
  • STRING:  XP_010050479.1  — (Eucalyptus grandis)

Gene Ontology:

  • GO:0006108  — Biological Process — malate metabolic process
  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0006396  — Biological Process — RNA processing
  • GO:0006486  — Biological Process — protein glycosylation
  • GO:0015074  — Biological Process — DNA integration
  • GO:0055085  — Biological Process — transmembrane transport
  • GO:0055114  — Biological Process — oxidation-reduction process
  • GO:0016021  — Cellular Component — integral component of membrane
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0003723  — Molecular Function — RNA binding
  • GO:0004471  — Molecular Function — malate dehydrogenase (decarboxylating) (NAD+) activity
  • GO:0004576  — Molecular Function — oligosaccharyl transferase activity
  • GO:0004616  — Molecular Function — phosphogluconate dehydrogenase (decarboxylating) activity
  • GO:0005506  — Molecular Function — iron ion binding
  • GO:0005515  — Molecular Function — protein binding
  • GO:0005524  — Molecular Function — ATP binding
  • GO:0008173  — Molecular Function — RNA methyltransferase activity
  • GO:0008270  — Molecular Function — zinc ion binding
  • GO:0042626  — Molecular Function — ATPase activity, coupled to transmembrane movement of substances
  • GO:0051287  — Molecular Function — NAD binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >EcC054811.230|Eucalyptus_camaldulensis|B3|EcC054811.230
    ATGGAGTTGAAAAATGAGCAAGGAGTCCGACCAATGCAACAACATAGGCAATCGAAAACCATTCAAGCTAGTTCATGTCCAAGTCGGCCACAGCATGATCCACAACACTCAGCGACCGGACTCCACTTGGTTCGGATCGTGGACACGCTTATTGACTCGATCGGAGATTGCAGCGAGCCATTCGAGAAGCAATTGACGACAAGCGACATCATCGGCATTCAGAGCCGGCTGCTCGTGAATAAAACGGACTTTGCAACATCTATCTTGCCCTTGCTCGAGAAGGATGACGACATTGAGGTGGGAATTCCGGTGAAGGCGTTTAATCCAGCGGGGAAGGCGTATCCTATGACGTTCAAAATTTGGTGCGGCAGGTCGCATGTAATCACTAGCGGGTGGAATTTATTCGTTAAGGATAACCGATTGGAGGTTTCGGATATCGTTAGGGTATGGGCTTTTCGCGACGTCTGGACCCGAGAGTTATGCCTCTTGATTTCTAGTAGAAAGCCGGAGGTGCAGCAGCCGATTGAAAAGGAGGAGACG
Protein Sequence:
  • >EcC054811.230|Eucalyptus_camaldulensis|B3|EcC054811.230
    MELKNEQGVRPMQQHRQSKTIQASSCPSRPQHDPQHSATGLHLVRIVDTLIDSIGDCSEPFEKQLTTSDIIGIQSRLLVNKTDFATSILPLLEKDDDIEVGIPVKAFNPAGKAYPMTFKIWCGRSHVITSGWNLFVKDNRLEVSDIVRVWAFRDVWTRELCLLISSRKPEVQQPIEKEET