Gene Details:
- Gene ID: EcC054811.230
- Gene Family: B3 Family
- Description: B3 Family protein
- Species: Eucalyptus camaldulensis
- Source: B3 family gene from PlantTFDB
Protein Features:
- PROSITE profile: PS50863
- SMART: SM01019
- SuperFamily: SSF101936
- Pfam: PF02362
- Gene3D: G3DSA:2.40.330.10
- InterPro: IPR003340 IPR015300
Annotation Proteins:
- Refseq: XP_010050479.1 — PREDICTED: putative B3 domain-containing protein At4g03160
- TrEMBL: A0A059CMH9 — A0A059CMH9_EUCGR; Uncharacterized protein
- STRING: XP_010050479.1 — (Eucalyptus grandis)
Gene Ontology:
- GO:0006108 — Biological Process — malate metabolic process
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006396 — Biological Process — RNA processing
- GO:0006486 — Biological Process — protein glycosylation
- GO:0015074 — Biological Process — DNA integration
- GO:0055085 — Biological Process — transmembrane transport
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0003723 — Molecular Function — RNA binding
- GO:0004471 — Molecular Function — malate dehydrogenase (decarboxylating) (NAD+) activity
- GO:0004576 — Molecular Function — oligosaccharyl transferase activity
- GO:0004616 — Molecular Function — phosphogluconate dehydrogenase (decarboxylating) activity
- GO:0005506 — Molecular Function — iron ion binding
- GO:0005515 — Molecular Function — protein binding
- GO:0005524 — Molecular Function — ATP binding
- GO:0008173 — Molecular Function — RNA methyltransferase activity
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0042626 — Molecular Function — ATPase activity, coupled to transmembrane movement of substances
- GO:0051287 — Molecular Function — NAD binding
Family Introduction:
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature:
Sequences:
CDS Sequence:
- >EcC054811.230|Eucalyptus_camaldulensis|B3|EcC054811.230
ATGGAGTTGAAAAATGAGCAAGGAGTCCGACCAATGCAACAACATAGGCAATCGAAAACCATTCAAGCTAGTTCATGTCCAAGTCGGCCACAGCATGATCCACAACACTCAGCGACCGGACTCCACTTGGTTCGGATCGTGGACACGCTTATTGACTCGATCGGAGATTGCAGCGAGCCATTCGAGAAGCAATTGACGACAAGCGACATCATCGGCATTCAGAGCCGGCTGCTCGTGAATAAAACGGACTTTGCAACATCTATCTTGCCCTTGCTCGAGAAGGATGACGACATTGAGGTGGGAATTCCGGTGAAGGCGTTTAATCCAGCGGGGAAGGCGTATCCTATGACGTTCAAAATTTGGTGCGGCAGGTCGCATGTAATCACTAGCGGGTGGAATTTATTCGTTAAGGATAACCGATTGGAGGTTTCGGATATCGTTAGGGTATGGGCTTTTCGCGACGTCTGGACCCGAGAGTTATGCCTCTTGATTTCTAGTAGAAAGCCGGAGGTGCAGCAGCCGATTGAAAAGGAGGAGACG
Protein Sequence:
- >EcC054811.230|Eucalyptus_camaldulensis|B3|EcC054811.230
MELKNEQGVRPMQQHRQSKTIQASSCPSRPQHDPQHSATGLHLVRIVDTLIDSIGDCSEPFEKQLTTSDIIGIQSRLLVNKTDFATSILPLLEKDDDIEVGIPVKAFNPAGKAYPMTFKIWCGRSHVITSGWNLFVKDNRLEVSDIVRVWAFRDVWTRELCLLISSRKPEVQQPIEKEET