Information report for DCAR_025679
Gene Details
|
|
Functional Annotation
- Refseq: XP_017217388.1 — PREDICTED: uncharacterized protein LOC108194964
- TrEMBL: A0A164U9M6 — A0A164U9M6_DAUCS; Uncharacterized protein
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_05760_BGI-A2_v1.0
- Malus domestica: MDP0000192438, MDP0000302532
- Manihot esculenta: Manes.07G115200.1.p
- Medicago truncatula: Medtr7g050560.1
- Prunus persica: Prupe.7G143600.1.p
- Pyrus bretschneideri: Pbr030238.1, Pbr029895.1, Pbr019382.1
Sequences
CDS Sequence:
- >DCAR_025679|Daucus_carota|B3|DCAR_025679
ATGAAGCTCGCTTCAGGATCCATTCATCCTGCAAAGGCGCAAAGGTTTTTCAAAATCATCGTCTCCGAAATTAGTCCCCAAAGCAAGCTCATGATTCCGAAAGAATTTGTGAAAAATCACGAAGAGGAGCTACGAGGACGCGTGCACTTGAAGGCACCCGGCAGTGCAGCTTGGCCAGTGGATGTGGTGAGAACACAAGGCGAGGTCTGGTTGCAAAATGGCTGGCCTGAATTCGCCAAATTTTACTCGCTTTCTTTTGGTTCTCTGTTGGTTTTTGAGTACTTGGAGCATTTTAATATTCGAGTGCGTGTGTTCGACACGAGTGCAACTGAGATAGACTATTCTTTAACATGTGATCCGAATCTTGATGATGGAGAATCAGTACCCCGGGTGAGAAAGAGAGATAGTTCAAGGAGATGTGAACTAGTCAGGGCTTGTAAGAAGACCAGGGCAAGTACTGAGGAAACCTTCCATAATGGATTCAAATTGAAGCAAGAAAAAGCAAATGGAGATCGAGGTTCGGCTAAAGAAGAGATAGAGAGAGCAGTTAACTTGGCTGCTTCTTTTAAATCTGAGAAGCCCTTCTTTATTATTCATATGAGACCAACATATGTAAGTGGAGTTAGCGTGGAGGTAAGGAAAAGCTTCCTAGAGACTTTCAGAAAGTGGAAGAACAAGGGGAAGGGGCAAGTCATCTTTCAAATTGGAAGAAGAAGCTGGCTGGTTGGATATACATTCAGTGCTGGGGATCGTTGTACTCTAACCGCTGGCTGGAAAACGTTTAGAACAGACAATTCACTTAAGGTAGATGATGTTTGCGTGTTTGAGCTGATCAACCCCTCTACAAAATTGTTTAAGGTCATCATATTTCAAGCAAAATCACGTCCTGATGAATACATATGTGATGTCTGTTCTCGTCTTGTGAAGTTTGCTTATGCATGTGAGGAATGTACAGTTGATGTTTGTGTGTTTTGCGGTCTGGAGCAAAGGGTGCTTTGTCATGAAGGTCACCAGCAGCACAAATTAACATTGATGAATAGGGAAGCCTTGTTTAAGTGTGATGCTTGTGGAGAGGAAGATAAAGACTCTTCCTACGTTTGCACCACCTGTGAATTCTGGATCCACAAGACATGTGCTTTATCGCCCTACATTATTCCAACTCAAGCTTATCACCATCATCCCCTCTTTCTCATCTACTCCATTCCTCAGATGCACCGCCAATTTGAACGAGAGTGCAACATCTGCCACGAAGTAGTTTACAATATCAACTGGATGTACTATTGTCACAAATGCACTTACTTTGTGCACATGAGGTGTGCTATGTCCTCGGATACAGTACCTATTGTAACTGACACTGAAGCGGCTGACATTGATGATGAAACTGTTCTGCTACAATTTCCTCTGCCTCACGAGGAGTCACTATTCGATCTTATTATCACCCAGTGTGGCAAATTCCAAGTTGATCTTCAGGGTGAAGGGGAAAGCAGTACCCCTATACCTGATAATCCACACATAATTGAAGGGCACTGGAGTCACGAGAACCATCAATTAGAACAACTTCAATTCGCTACCAGTAATGATGATAATGATGACAACGATGATGATAGGAGAGTGATGATATGCAACGGCTGCATTCAGCCCATAACTGATACTCATCCGTCATATTATGCTTGTGTCCAGTGTGGTTTTTTTCTCCACTCCTTCTGTGCCACTAAGCTGCCACCTGAGTTGCCTAGAGGAGCATCCTCATTCCACCCCTCACACTCACTCGTGCTTTATATGAGTGATCAGTTTTACGGTTATGTGGACTGTGAAGTTTGCGGTTACTGCACAAATGGATTCTACTACAAATGTGAGGACTGTGATATCAAAATTGATATCCGCTGTGCATTTTTGCCTAAAAGGATAAAACATAGATCTCATAAACGCCACTCCCTTGTTCAGCGTCCATTCTCCAATTCCATTTGTAGTGTCAGTAACTTAAAGATTACTAATGGTGTGGAATATGCATGCGAGACTTGCAGCAGCTTCCAGATTCATATAGATTGTGTAATTTATCCAAGTAGGATGAATCACAGGTATGATCTTCACGCGGTGACCTTGAGAGAGCCTCCATTCTTCTACGAGGGAGTTTTCTACTGTGAAATATGTGAAGAACAAGTTAACAATCAGCGGTTGCTCTATCATTGTGACGAATGTGATCATTCATTTCACCATTATTGCTTACGTTGGTACGAGAGCTTCAAGTTTGGAGGGATCATAAACCGGATAATTCAAGAACAACCACACGCACTTGCATTGGTTCTGAAAAGGACTGCAAGAGACAAATCTCCCCTTTACATTTGCGGAATTTGTGAGGAGGGTTACAATTTCCTTTTCTTTTTCGAATGTGGTGGCTGTGGATTTCTTGTCTGCTGCAACTGCTTCGGAGAAATCACTGACTCCACAAACTCAACCTCGGGTTCAGGCTCAGTTTCATGTTAA
Protein Sequence:
- >DCAR_025679|Daucus_carota|B3|DCAR_025679
MKLASGSIHPAKAQRFFKIIVSEISPQSKLMIPKEFVKNHEEELRGRVHLKAPGSAAWPVDVVRTQGEVWLQNGWPEFAKFYSLSFGSLLVFEYLEHFNIRVRVFDTSATEIDYSLTCDPNLDDGESVPRVRKRDSSRRCELVRACKKTRASTEETFHNGFKLKQEKANGDRGSAKEEIERAVNLAASFKSEKPFFIIHMRPTYVSGVSVEVRKSFLETFRKWKNKGKGQVIFQIGRRSWLVGYTFSAGDRCTLTAGWKTFRTDNSLKVDDVCVFELINPSTKLFKVIIFQAKSRPDEYICDVCSRLVKFAYACEECTVDVCVFCGLEQRVLCHEGHQQHKLTLMNREALFKCDACGEEDKDSSYVCTTCEFWIHKTCALSPYIIPTQAYHHHPLFLIYSIPQMHRQFERECNICHEVVYNINWMYYCHKCTYFVHMRCAMSSDTVPIVTDTEAADIDDETVLLQFPLPHEESLFDLIITQCGKFQVDLQGEGESSTPIPDNPHIIEGHWSHENHQLEQLQFATSNDDNDDNDDDRRVMICNGCIQPITDTHPSYYACVQCGFFLHSFCATKLPPELPRGASSFHPSHSLVLYMSDQFYGYVDCEVCGYCTNGFYYKCEDCDIKIDIRCAFLPKRIKHRSHKRHSLVQRPFSNSICSVSNLKITNGVEYACETCSSFQIHIDCVIYPSRMNHRYDLHAVTLREPPFFYEGVFYCEICEEQVNNQRLLYHCDECDHSFHHYCLRWYESFKFGGIINRIIQEQPHALALVLKRTARDKSPLYICGICEEGYNFLFFFECGGCGFLVCCNCFGEITDSTNSTSGSGSVSC*