Information report for DCAR_022379
Gene Details
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Functional Annotation
- Refseq: XP_017256419.1 — PREDICTED: B3 domain-containing transcription factor VRN1-like
- TrEMBL: A0A164VF79 — A0A164VF79_DAUCS; Uncharacterized protein
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G31510, AT2G31760, AT2G31770, AT1G05890
- Beta vulgaris: Bv5_121620_pazn.t1
- Citrullus lanatus: Cla001807
- Fragaria vesca: mrna29444.1-v1.0-hybrid
- Glycine max: Glyma.16G046700.1.p, Glyma.16G046700.2.p
- Gossypium arboreum: Cotton_A_35970_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A11G1749, Gh_D11G1906
- Malus domestica: MDP0000266267
- Petunia inflata: Peinf101Scf00146g02003.1
Sequences
CDS Sequence:
- >DCAR_022379|Daucus_carota|B3|DCAR_022379
ATGGGAAGAAGGCCACCAGAAAGAAAGCCTGCGTTCTCGAAGATTCTTGTCAAAGATTTCTCCAAGAAGCTGATGATACCGTCCAAGTTTGTGAGCCTTCATCGCGGAACTTTGGCTAGAAAATGCGTGCTAAGGCCTACCGGTACGCAAGATGCGTGGCGTGTGAAAACCAAACAGATCAATGATTCTTTGTATTTCAAGAAAGGCTGGAAGAAGTTTGCACGACATTACTCCTTAGGCTTTGGTGACTTGTTGGTTTTTCGGTATGCTCAAGATTGCGAGTTTTATGTGGACATGTTTGATCAATCTTGCTGTCTTAAGGAACTAGCTGTTACTTCCCACAATGTCAAGTCAAGGAAGCACAGCCACTTGGAGGAAGCAAATCCTGGAGAAAAAGAAGCTCTTGACAAAGCGGAAAAGTTGATGTCAAGCTCAAAGTTCCCTGCATTCCTAAAGATTATGCAGTGGGCTTACGTGAGGCCTGGCGGATATTTGCCTCTGACAACAGATTTTGCTAGAAAGTATTTTAAGGACAGCACAAGGGAAGTGAAGATTGAGGTATCAGGCAAGACATGGACAGCTGGGGTAAGGAAAGATTGCGCTACATATAGGTTGACGAGATGCTGGAGTTACTTGGTAACAGAACAAGCTCTTAAAGTTGGTGATGTATGCGCTTTTGAACTTATCAATACCGAAGATTATACACTCAAGCTTACAATTTTCAGCAGTACCAGGAAGAACAAAATATGTAAAACTAAAGCCAGGCCTTTCAGCTCATTCGAAGCACGCTCTTGCCAGGCACCTAAGAAACGTTCTAGCCATGCACTTGAAGCACAATCTAGAAAGGCAATTAAAGCAGCAAACAGATTTTCATCACTTTCAAAGTATCCTTCCAGCCCGTATGTTATGCGTCACACTTACTTGCGCGCAAGATATCTGATAATACCACCCAAGTTTGCGAGGCTTCATCTCGGAACCTTGGCTAGAAAATGTATACTGAGGCCTACTGGTACGCAAGATGCATGGCTCGTCAGAACCAAACAGATCAATGACTCTTTGTATTTCAAGAGAGGTTGGAAGAAGTTTGCACAACATTATTCATTAGGCTTCGGGGACTTGCTAGTTTTTCGATACAAAAAAGATTGTGAGTTTCATGTGGACGTGTTCGATAAGTCTTGTTGTCTTAAGGAACTAGCTGTTAAATCCCCACATGTTGGGTCTCAGATGGACACTACCTCAAAATTTCCCAGGAAGAAGAAAAAATTGCAGACTAAAGCAAGGCCCGGCAAGGCTTTGGAAGCAAAGTATCCTTCCTGCCCGTGTGTTATGAATACCTCTTACTTGCACGGACGATATCTGGAGTATAAAAGAATGGGAAGAAGCCCACCGCCACGAAAACCTTCATTCATGAAGATTCTAGTTACAGATTTCTCCAAGAAGCTGATGATACCACCCCAGTTTGTGAGGCTTTATCGCGAAACCTTGGCTAGAAAATGTATACTAAGGCCTACTGGTACGCGAGATTCATGGTGTGTAAGGACAAAGTGGATCAAAGATTCATTGTATTTCAAGAAAGGCTGGAAAAAGTTTGCCCGACATCATTCACTAGGCTACGGTGACTTGTTGATTTTCCGGTATGCTAAAGACTGCAAGTTTTATGTTGACATGTTTGATAAGTCTTGCTGTTTTAAGGAACCTGTTAACTCGCAAAATGTGGGGTCTCAGAGGGACACTACTCCCATACTTCCTGGCCAAGAAGCCAAAGTCGATCTTGAAACATCAGCTCTTGATGCAGCTCTTGATGCGGAAGAGTTCATGGCAGGCTCAGAGTTTCCTGCATTCAACAGGATTGTCAGACCAGCTTACCTGAAAGCTAACGGATATATGCCTATTGATCCAAATTTTGGAAGATGGTATTTGGAAGACAGCATAAGAGATGTGAAGATTGATGTGTCAGGTAAGATATGGACTGTTGGGGTAATAGAACACGGCTCTTCAGGGAGATTGAGTAGATGTTGGAGCTCCTTGGCAAAGGAACACGCTCTTAAAGCGGTGCATGGCTCTAGTATACTACTTCACTCGGATAACAGCCCTAGTTTTACAGGCTCTGTTGAATGTGTAGAGGATCGCGAAAATTGCCAGACTAAAGCAAGGTCTGGTAAGGCTCTTGAAGCACGTTCTAGCCAGGCACTTGAAGAAGATTCTAGCCAGGTTATTGAAGCAGCGTACGAATTTGCTTCACAGTCAAAGCATCCTTCCTATCCGTGTGTTATGTCTTTCAATTACATCCGAAGGGGTAATCTGTTGATACCATCCAAGTTTGTTAGGCTTCATTGCGGAACTTTGCCTAGAAAATATATGATACGGCCTACTGGTACACGAGATTCATGGGGTGTAAGAACGAAGCAGATCAACAATTTATTGTATTTCAAGAAAGGTTGGAAAAAGTTTGCACGCCATCATTTGTTAGGATTTGGTGACTTGTTAGTTTTCCGCTATGCTCAAGATTGCGAGTTTCATGTGGACATCTTTGATAAGTCTTGCTGTCATAAGGATCCTGTTACCTCCCAGGATATTGAGTCTAGGAGAGATACTACTCTCATACTGCCCAGGGAAAACAAAAATATTCAAAGTAAAACAAGATCTGGCCAGGCTCTGGAAACACACTCTAGCCAGGCCCTGGAAGCAAAATCTAACGAGGAATTTGAAGCACGTGTTAACCAGGCTCGTGAAACAGCCTACAAATTTTCATCACTGTCAAAGTATCCTTCCTATTCATGTGTTATGCAGTATTCTTATGTGCGACAAAAGTTTCTGTTTGAAAGGTGGGATGCTAATCAGAAGTCAAGAATGAAAGCACAATCTGATCTGCAGAAAATGCAGAGGAAGAATATTCGTGGTCTGTGTGAAAAGTTTGCAGTGACCAAGCTAGAGTTCAAATTTGTTATAGAAGCCTGGCAACAGATTGTTAAATGTAGGCGCACGTTGAAATGGAGCTATGTGTATGGGTATTTTATTCCCGAGGATGAACCTGCAAAGACAGCATTGTTTGAGTACTTGCAAGGTGAAGCTGAGGCAGGATTAGAGAGACATCATCATTGTGCAGAAAAGGAACTCTTTATGGTTCTGAACGACGTTAATGCTACTGCAGATCAATTCCACAGTTTTCGAGTGAAGCTGGAGGAGCTTACAAGGGTGACTAGAACTTACTTTGCAAATCTAGTTACAGCACTGGAGAACAATCTATATGAAAGTGAAATTAGAGGTCCACCAAAAGAAAAAACCCGAAAGATAGTAAAAAAGTTTACGAAACAGAGGGGGGAAAGGAGAAAGGTACAAAAATGA
Protein Sequence:
- >DCAR_022379|Daucus_carota|B3|DCAR_022379
MGRRPPERKPAFSKILVKDFSKKLMIPSKFVSLHRGTLARKCVLRPTGTQDAWRVKTKQINDSLYFKKGWKKFARHYSLGFGDLLVFRYAQDCEFYVDMFDQSCCLKELAVTSHNVKSRKHSHLEEANPGEKEALDKAEKLMSSSKFPAFLKIMQWAYVRPGGYLPLTTDFARKYFKDSTREVKIEVSGKTWTAGVRKDCATYRLTRCWSYLVTEQALKVGDVCAFELINTEDYTLKLTIFSSTRKNKICKTKARPFSSFEARSCQAPKKRSSHALEAQSRKAIKAANRFSSLSKYPSSPYVMRHTYLRARYLIIPPKFARLHLGTLARKCILRPTGTQDAWLVRTKQINDSLYFKRGWKKFAQHYSLGFGDLLVFRYKKDCEFHVDVFDKSCCLKELAVKSPHVGSQMDTTSKFPRKKKKLQTKARPGKALEAKYPSCPCVMNTSYLHGRYLEYKRMGRSPPPRKPSFMKILVTDFSKKLMIPPQFVRLYRETLARKCILRPTGTRDSWCVRTKWIKDSLYFKKGWKKFARHHSLGYGDLLIFRYAKDCKFYVDMFDKSCCFKEPVNSQNVGSQRDTTPILPGQEAKVDLETSALDAALDAEEFMAGSEFPAFNRIVRPAYLKANGYMPIDPNFGRWYLEDSIRDVKIDVSGKIWTVGVIEHGSSGRLSRCWSSLAKEHALKAVHGSSILLHSDNSPSFTGSVECVEDRENCQTKARSGKALEARSSQALEEDSSQVIEAAYEFASQSKHPSYPCVMSFNYIRRGNLLIPSKFVRLHCGTLPRKYMIRPTGTRDSWGVRTKQINNLLYFKKGWKKFARHHLLGFGDLLVFRYAQDCEFHVDIFDKSCCHKDPVTSQDIESRRDTTLILPRENKNIQSKTRSGQALETHSSQALEAKSNEEFEARVNQARETAYKFSSLSKYPSYSCVMQYSYVRQKFLFERWDANQKSRMKAQSDLQKMQRKNIRGLCEKFAVTKLEFKFVIEAWQQIVKCRRTLKWSYVYGYFIPEDEPAKTALFEYLQGEAEAGLERHHHCAEKELFMVLNDVNATADQFHSFRVKLEELTRVTRTYFANLVTALENNLYESEIRGPPKEKTRKIVKKFTKQRGERRKVQK*