Information report for DCAR_010940
Gene Details
|
|
Functional Annotation
- Refseq: XP_017239764.1 — PREDICTED: B3 domain-containing protein Os03g0212300-like
- TrEMBL: A0A166B0D3 — A0A166B0D3_DAUCS; Uncharacterized protein
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna29444.1-v1.0-hybrid
- Juglans regia: WALNUT_00011203-RA, WALNUT_00005007-RA
- Lotus japonicus: Lj5g3v0508090.1, Lj5g3v0508090.2
- Malus domestica: MDP0000236750
- Manihot esculenta: Manes.07G115200.1.p
- Petunia inflata: Peinf101Scf00146g03027.1, Peinf101Scf00146g02006.1
- Prunus mume: XP_008240722.1
- Prunus persica: Prupe.7G044800.1.p
- Ziziphus jujuba: XP_015890081.1
Sequences
CDS Sequence:
- >DCAR_010940|Daucus_carota|B3|DCAR_010940
ATGGCAAGAAGGCCAAATCGTCCGGCGCGAATAAGACCTTATTTCGTCAAGGTTATATGCAAAAGATTCTCCAAAAAGCTGTTGATCCCGCGCAAGTACGTTAGTCTTCATCGCGAAACTCTGGGTAAAGAATGTGTCCTCTGGCCTAGTCATACACGTGAATCATTTCGCGTAAGGACTAAGAACATTGATGATGAGTTGTATTTCAAGAAAGGGTGGAAAGTGTTTGCGAGAACTCATTCGTTGAAGTTTGGTGATTTGTTAATTTTTCGACATGTCCGAGATTCTGAGTTTGATGTTGATGTGCTTGATATGAATGGGACACCTAGAGAACCTGTTCTGTCTGAAAATGACCACATTCTTGGGGAAGTTGCTCGTGCACCACCTAGTCACATCGGCCGACAGAAGAACATTACTGAGACAGCAGCTCTTACTGGAGCGGACGCGTTAATATCAAGTTCAGATGCTCCTTTCTTCAAGAAGATAATGAAGGCTGCTGAGCTGAAGCCTGGTGGATATTTGTATGTTCCTGCACGCTATGCAAAAGATTACATGAAAGATGGCACAAATGATGTGAAAATTGAGTACTCGGATAAAGTTTGGATAGCTAAGGTACTGAGACGACGAGCAGGTGACAGAAGGACGTTCCTTGACTCCGGTTGGAGTTATTTGGCTAGGGAGAGCAATATTCAAGAAGGCGATGTCTGTGTTTTCCAACTTATCAGCACCGAAGATAACACACTTAAACTCACAATATTCAAGAATAACAATGCAGGAGGACCAAAAACGAGCACTTCTCAGACAGGACGATCAAAAATGAGCACTCTTCAGACAGGACGCTCAAAAAAGAGCATTCTTCAAACAGAAGCTATTAGCTCGGCAGAGGCATTAGCAGCAAGTTCAGAGTATCATTCCTTCATAAAGATAATGAAGCCTGCTTATGTGAGATCTAATGGATGTCTGCATGTACCGGAACATTTTGCAAAAAAGTATTTGAGAAATAGCTCAAGAGATGTGAAGATCAAGTTCTTGGATGATGTATGGATACTGAGACGACAGCCATCTGAAGTTAGGACATTCCTTGGCGGCTGGAGTGACTTGGCAAGGAAGAACTCTCTTCAAGTGAATGATGTTTGTGTTTTCCAACTTATCAATACCAAAGATTGCACTCTCAAACTCACAATTTTCAAGCAAACCAGTGGAGAAAATCAGGGGCATAAGCAATGCCAAGCTAAATTGAAGTCAAGATCTTCCTATTCAGTGAAATCTAAAAAATACTCTAAAAGGGCATTCGAAGAAGCTAAGGAATCTGAAGCACTCCCTAACAAGTCATTTAAGTGTGGGGAAGATCAGAAGCATGGGCACCTAGCTGAAGTTAAATTAGAGTCTTCTGATTTAGATTTAGAGATTACTCTGGTATCTAAAGGGCCCTCACCCTCTGACAAGGCACTTGAAGACGCCAAGAAATTTCAATCGGAATCAAAGAATACTTCATTTGTTGCTGTTATGCGCCCCGCTTACATAAATTATAGTTACTTGCATGTGCCTAAAACTTTTGTGGACGAAATGGATAAGAAAGCGAGTGGCAGCCAGCTGAAGCTTCAGTCCTCAAACTGTGAAATGAATGCGAAACTGATTTTTATGAAGCTACCTGGGATGCTGGGGGCAAAGATCAGGATGCTGTTATTTATGTTATTGTCAACTTTAGCAGCACCGCTACTTGATATGGCAAGAAGGCCAAAGAGTTCGACAACAACAAAGCGCGTTTTCATCAAGGTCTTGTTCAGTGGTTTCATGAAGAAGCTGCTGATCCCGCGCAAGTATGTTATGCTTCATGGTGAAACTTTAGGTAAAGAATGTGTGCTCAGGCCTACTCATACAAGTGATTCATGGCGCGTAAGGACTAAATGCATCGACGATGAGTTGTATTTCAAGAAAGGGTGGAAAAAATTTGCGAAACATCATTCGTTGCAGTTTGGTGACTTGTTGATTTTCCGACATGTTCAAAATTCTGAATTTGATGTGGATGTGGTTGATAAGAGCGGTATTCCCAGAAAAACCCTTGCTTTCAGAACTGACCAAGTTATGAAGGACTCTGCTCCTGTACCAACTAGCCGAAAGAAAAAGGCGATTCTTCAAACTGCAGCTCTTACAGCAGCAGAAGCTCTGATTGCAAGTTCCGAATATCCTTCCTTCTATAAGATAATGAAGTCTGCTTATGTGGGATCTGGTGGATATTTGCATGTATCGTTTGATTTTTCTAAAGAGCATATGAAAGATTACTCAGGATATGTGAAAATCAGGTTGTCAGAATCAAAAGCTTGGATGATTAAGGTACTGAGACAAGCCTCTGAAGGCAGGACATTGCTGAGCGCTGGGTGGAGTAACTTGGCAAGAGAGAATTCTCTTCAAGTGAATGATGTTTGTGTGTTTCAGCTCATCAATAAAAAAGATTACACATTTCAACTCACAATATTCAAGCATATCAGTGGAGGAAATCAGAAGCACAAGAATTGTAAAGTTAAATTGAAGTCTTCTGATTCAGAGCCTATTCCAAAATCTAAAAAAAATTCTGACAAGGCATTTGAAGAAGCTGAGAGATTTAAATCAATGTCCAAGCATCATTCAATCATAACTGTTATGCATCCCGCTTATGTGAAGAGGGCATTTCTGCATGTTCCATCCGCATTTCATAACTATATGTGTAAGGAGGAGGGAGAAAACGAAGTGAGACTTCAGTGCCTTGGCAAAGAACGGAAAGTGATCATGAGAAATGTTCGTGAACAGTGCAGGATATCTAAAGGCTGGGGAGCCTTTGTGAAGGAGAATTCTATAGAGGTGGATGATGTTTGCGTATTGGAGCTCATCAGCAAAGAAGATGCTCTGATAAAAATGATACCACCCAAGTTCGTTAGACTTCATCGCGGAACTTTGCCTAGAAAATGCTTGTTAAAGGCAAGTCATACACAATATTCATGGCCTGTAAGAGTGAAGCAGATGAACAATTTTTTGTATTTCAAGAAGGGTTGGGGAAAGTTTGCCCAATTTCATTCGTTAAAATCTCGTGACTTGCTAGTGTTCCGGTATGATCAAGATTCCGTGTTTTCCGTGGACATGTTTGATGAGTCTTGCTGTTCCAAGAAACTTGTTACTACCTCTCAGAATGAAAAACCCAGGACGAAATCTTCTCCAGCTATAGAATCCAGCAAATTTAAGACATTCGTCAATCATAAGAAACCAGGTGGCCTTATAGCAGCAGAAGAGCTTATGGCAAGCTCAGAGTTCCCCAAATTCATCTTGGTTATGCAACCAATTTACGTAAAATCTGGTGGCTATATGCATGTTCCACAAGAGTTTGCAAATATGCATCTAGAAGAAAGCCCAAGGGAATTGAAGATTGAGGTCGGAGATAAGACATGGAGCATTGGAATAGTGAAGGACCGACGTTCACGAAGGCTGACTAAGGGTTGGTGTCCATTTGTTAGAGAAAATGGTCTGAAACTGGGGGATGTATGCGTTTTCCAACTCACAAATGCTCAAGATTTTACCCTCAAACTTTCAATTTTTAGCAGCACCACTTAA
Protein Sequence:
- >DCAR_010940|Daucus_carota|B3|DCAR_010940
MARRPNRPARIRPYFVKVICKRFSKKLLIPRKYVSLHRETLGKECVLWPSHTRESFRVRTKNIDDELYFKKGWKVFARTHSLKFGDLLIFRHVRDSEFDVDVLDMNGTPREPVLSENDHILGEVARAPPSHIGRQKNITETAALTGADALISSSDAPFFKKIMKAAELKPGGYLYVPARYAKDYMKDGTNDVKIEYSDKVWIAKVLRRRAGDRRTFLDSGWSYLARESNIQEGDVCVFQLISTEDNTLKLTIFKNNNAGGPKTSTSQTGRSKMSTLQTGRSKKSILQTEAISSAEALAASSEYHSFIKIMKPAYVRSNGCLHVPEHFAKKYLRNSSRDVKIKFLDDVWILRRQPSEVRTFLGGWSDLARKNSLQVNDVCVFQLINTKDCTLKLTIFKQTSGENQGHKQCQAKLKSRSSYSVKSKKYSKRAFEEAKESEALPNKSFKCGEDQKHGHLAEVKLESSDLDLEITLVSKGPSPSDKALEDAKKFQSESKNTSFVAVMRPAYINYSYLHVPKTFVDEMDKKASGSQLKLQSSNCEMNAKLIFMKLPGMLGAKIRMLLFMLLSTLAAPLLDMARRPKSSTTTKRVFIKVLFSGFMKKLLIPRKYVMLHGETLGKECVLRPTHTSDSWRVRTKCIDDELYFKKGWKKFAKHHSLQFGDLLIFRHVQNSEFDVDVVDKSGIPRKTLAFRTDQVMKDSAPVPTSRKKKAILQTAALTAAEALIASSEYPSFYKIMKSAYVGSGGYLHVSFDFSKEHMKDYSGYVKIRLSESKAWMIKVLRQASEGRTLLSAGWSNLARENSLQVNDVCVFQLINKKDYTFQLTIFKHISGGNQKHKNCKVKLKSSDSEPIPKSKKNSDKAFEEAERFKSMSKHHSIITVMHPAYVKRAFLHVPSAFHNYMCKEEGENEVRLQCLGKERKVIMRNVREQCRISKGWGAFVKENSIEVDDVCVLELISKEDALIKMIPPKFVRLHRGTLPRKCLLKASHTQYSWPVRVKQMNNFLYFKKGWGKFAQFHSLKSRDLLVFRYDQDSVFSVDMFDESCCSKKLVTTSQNEKPRTKSSPAIESSKFKTFVNHKKPGGLIAAEELMASSEFPKFILVMQPIYVKSGGYMHVPQEFANMHLEESPRELKIEVGDKTWSIGIVKDRRSRRLTKGWCPFVRENGLKLGDVCVFQLTNAQDFTLKLSIFSSTT*