Information report for DCAR_004795
Gene Details
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Functional Annotation
- Refseq: XP_017229561.1 — PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X2
- TrEMBL: A0A166JGH0 — A0A166JGH0_DAUCS; Uncharacterized protein
- STRING: XP_009772834.1 — (Nicotiana sylvestris)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA06g25910
- Gossypium arboreum: Cotton_A_04150_BGI-A2_v1.0
- Nicotiana benthamiana: Niben101Scf02482g02005.1
- Nicotiana tabacum: XP_016450195.1
- Petunia inflata: Peinf101Scf03806g00041.1
- Populus trichocarpa: Potri.019G130300.1, Potri.013G157500.2, Potri.013G157500.1
- Ricinus communis: 29976.m000497
- Sesamum indicum: XP_011080654.1
- Solanum lycopersicum: Solyc06g082520.2.1
- Ziziphus jujuba: XP_015874689.1
Sequences
CDS Sequence:
- >DCAR_004795|Daucus_carota|B3|DCAR_004795
ATGGAGTCCTCAAATAATAATAACAATACTTGCATGAACGAAGCTTGCAGAGCAACGACGTCGTCGGGTGAATGGAAGAAAGGCTGGGTGTTGAAATCAGGTGGACTTGCTGCTCTTTGTTACAATTGCGGATCGGCTTATGAGAATTTGATTTTTTGTGACACATTCCACCGTGAAGAATCCGGATGGAGGGAGTGCAAATTTTGTGGAAAGCATATTCATTGTGGATGCATAGCATCAAAATCTTTGCACGACTACTTGGATTCTGGAGGTGTAGGATGTTTAAGCTGCATAAAATTTTCGGAAACTCAGCTGATAAGACAAATTCAGAATCCAAGTGATGATATTTTTGGCGGACTAGGCACACTGGCAGCGATTTGCGATCCACAATCTTCCGTCATCGAAAATTATATGGAGGGGAAGATTGTTACCAAGGGAAAGCTCACTAAGCCGAGCAAAAGTATGGAGGGAAGTCAGTCCAATGGACATGACCTCTTCCTACAATCTCAACAGGGTGAACAAAACTTATCTAGTGTGCCAACGAAGAAAGAAGTAAACATGCTTCCAAAAGGAGAAGTTGGGACTGGCGTTTCACATGTCTCCCAACATTCTAATAAATTAACTATAGTTTCGAAGCCAGATGCTACTCCGCAACCACAAGGGCCGAAAGATATGTATGAGTCACTAGCTCAGCCGTCTTTGAACTTCTCTTTTGGTGCACACTTGAGTACTTCAAATAGTATGCGACCTTTACCTGGTGAGGGTGTTGAAGGAAGAGACAAAAACAAAGTTCCTCCCTTTCAGCAAGGTCAAAGGTCACGCCAAATTCTGCCCAAGTCTTCTAAACCTGGCATCGTCATAAGAGCACAGGGGAGTAACGGAACAGCGTCTCAGACACGGGTTGCTAGACCTCCCGTGGAAGGGCGTGGCCGAATGCCATTATTTGAGAAGGTTCTTAGTGCTAGTGATGCTGGTCGAATTGGGCGTTTGGTCCTGCCAAAAGCATGTGCGGAGGCATATTTTCCTCCTATTAATCAGTCTGAGGGTGTGCCAATAAGGATGAAAGATATCAAGGGAAAAGAGTGGACTTTTCAGTTCAGATTTTGGCCCAATAATAACAGTCGGATGTATGTCTTGGAGGGGGTAACTCCTTGTATACAGAATATGCAGCTACAAGCTGGTGATACAGTGACCTTCAGTAGGATTGATCCCGAAGGTATGCTTGTAATGGGGTGTCGCAAGGCAGCAAACTCGGGTGACAATCGTGACATGCAGGACAGCTCAACACCTTCACTTCCTAATGGTGGTGGTATTGCAGATGATTTGGTTTCTGCTGTAAAAGTAGACCAACCTACAGATGCTTTTGATTGGATGAGAAAGGAAGAGCAACGAGGCCAGATAAATGGGGAATCAACACAACAACAGATGGGGCAACCAGAGAAAAAGAAATCCCGAATTATTGGTTCCAAAAGCAAGAGGCTTCTCATGCGTAATGAAGATGCTAATGAGTTACAGATTACGTGGGAAGAAGCACAGGAATTGCTCCGCCCATCTCCCAGTGCAAAGCCAACTATTGTTTTGGTTGACAACCATGAGTTCGAAGAATATGATGACCCACCTGTATTCGGGAAGAAGACCATATTCACAGCTCGAGAATCTGGGGAGCAAGAACAATGGGCTCAGTGTGATAATTGCTCCAAATGGCGGAGGCTTCCTGCTGATGTTCTTCTTCCTGCCAATTGGATATGCTCTGACAATATCTGGGATTCAAACAGATGTTCATGTTCTGCTCCTGATGAGATGGATCCGAAAAAGCTGGAAAATTGCTTTAGAGATACTAAAAAGAAAAAACTATTGGAGAACGGGCAAGAATGTGAGCCTTCTCGGCTGGATGCCTTGGCAAGTGCTGCTGTATTTGGAGATCCCACAGAAGACTCTGGTGAGCCTTCTCTAGTTACCACCACCAGGCACCCCCGCCATCGTCCTGGATGCACTTGCATTGTGTGCATTCAGCCCCCAAGTGGAAAAGGAAAGCACAAGCCCACCTGCATATGCAACGTATGCATGACTGTAAAGCGCCGCTTTAAAACCCTTATGTTGCGGAAGAAGAAGCGACAAGAGCGTGAGGCAGAAATTAACAGAGAGAAGACTCAGATACCTTTGAGGAGCGAATCTGAAGTAGACGGGACATCTGAGTATGCCCTGCTGCATGTCAATGGTTCTGAAACTGACAAGGAAAGAAGTGTAGTCAAAGTGGATTTGGCCTTGTCTAGCAACAAGGGAGACTTAGACTTAAATTGTGATCCCAACCGTGAAGATGATTCACAGATAGCTGAGGCGACAGGAACGAGCCTTGCCTCCTTTGTTCCTGTTGCCAGTCTTACATCTGATATTTGTACTGGAGGGGACTCAGTCCCCCCAACACTTGGTGCTTGTTTAATCTCACAAGCTGTTGATGAGAATGAGGAACACCTGCCTGAAGAAACAAATGTCACATCTATGGATGTGGAGGAAGAACAAGGGGATGAAGAATTTTGA
Protein Sequence:
- >DCAR_004795|Daucus_carota|B3|DCAR_004795
MESSNNNNNTCMNEACRATTSSGEWKKGWVLKSGGLAALCYNCGSAYENLIFCDTFHREESGWRECKFCGKHIHCGCIASKSLHDYLDSGGVGCLSCIKFSETQLIRQIQNPSDDIFGGLGTLAAICDPQSSVIENYMEGKIVTKGKLTKPSKSMEGSQSNGHDLFLQSQQGEQNLSSVPTKKEVNMLPKGEVGTGVSHVSQHSNKLTIVSKPDATPQPQGPKDMYESLAQPSLNFSFGAHLSTSNSMRPLPGEGVEGRDKNKVPPFQQGQRSRQILPKSSKPGIVIRAQGSNGTASQTRVARPPVEGRGRMPLFEKVLSASDAGRIGRLVLPKACAEAYFPPINQSEGVPIRMKDIKGKEWTFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDTVTFSRIDPEGMLVMGCRKAANSGDNRDMQDSSTPSLPNGGGIADDLVSAVKVDQPTDAFDWMRKEEQRGQINGESTQQQMGQPEKKKSRIIGSKSKRLLMRNEDANELQITWEEAQELLRPSPSAKPTIVLVDNHEFEEYDDPPVFGKKTIFTARESGEQEQWAQCDNCSKWRRLPADVLLPANWICSDNIWDSNRCSCSAPDEMDPKKLENCFRDTKKKKLLENGQECEPSRLDALASAAVFGDPTEDSGEPSLVTTTRHPRHRPGCTCIVCIQPPSGKGKHKPTCICNVCMTVKRRFKTLMLRKKKRQEREAEINREKTQIPLRSESEVDGTSEYALLHVNGSETDKERSVVKVDLALSSNKGDLDLNCDPNREDDSQIAEATGTSLASFVPVASLTSDICTGGDSVPPTLGACLISQAVDENEEHLPEETNVTSMDVEEEQGDEEF*