Information report for DCAR_004706
Gene Details
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Functional Annotation
- Refseq: XP_017233965.1 — PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
- TrEMBL: A0A166JDK9 — A0A166JDK9_DAUCS; Uncharacterized protein
- STRING: cassava4.1_021232m — (Manihot esculenta)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g038867m
- Gossypium arboreum: Cotton_A_33861_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G1550
- Juglans regia: WALNUT_00018591-RA
- Manihot esculenta: Manes.13G043500.1.p, Manes.12G043500.1.p
- Nicotiana benthamiana: Niben101Scf21140g00009.1, Niben101Scf01687g08001.1
- Nicotiana tabacum: XP_016433829.1, XP_016443113.1, XP_016443112.1
- Populus trichocarpa: Potri.002G252000.1
- Sesamum indicum: XP_011080160.1
Sequences
CDS Sequence:
- >DCAR_004706|Daucus_carota|B3|DCAR_004706
ATGAAAGGAGAGCATGGAGATGTTGATGAAGTGATGGAGGCTTTCGGTGAGGAGATCTGGCGAGGGAGTGAGGAGTCTTCGATTTTTTGTGATGTTTTTCCGGCTCTTCCTGATTTTCCATGCATGTCGTCGACATCGTCGTCGTCATCGAATCCGGCCTTGAATAGGCAGTTTGTTTCGTCTTCGGCGTCTTCGGGTTGTTCGGCTTCTTCGTCTGCGGTGGTGAAATCGGATGGGAACTTGAGGAGTGTTAAGTATGAGGTGGATGTTTCGCCTTCGGCGTTGTCGTCGACGGATTGCATGGGTGTGATGGAAGAATTTGGGTACATGGATCTGATTGAGGATGGGAATGAGGGGTGGGACCCGTCTTCGATTTTTCGGAATGATGATGAGACGAATGTTGGAGAGGAGTTGATAGATCAAGGGGGGTTTAAAGAGGAGGAGCGAGTTGAGGAAGAGATGGGATTGGATGAGCTTGGAGTGATGTTTTTTGAGTGGCTAAAGACGAATAAAGAGCATATTTCAGCGGAGGATATGAAGAATATCAGGTTTAAGAAATCGACGATTGAGTGCGCTTATAAGCGTATGGGGAGTTCAAAAGAAGGGAAGAAACAGCTCTTGAAACTTATTCTTGAATGGGTTGAGCAGTATCAGCTTCAGAAGAAACGGAGCCGAGAGGCGGCTGAGGCGGCTGCTGAAGCTGCTAGTTCACATCAAGTTCCCTGTCTGTATCAGGAACCGAATCCTAACCCTAACCCTAACTCTAACTTTGTGAATTTCATGCCGACCCCGGGTGCTAATGCTTGTATGTGGATTCCTATTCCTCAAAGTAGTAGTATTGATCCCCCGGCGGTAGTGCCTTCTGGGCCGGCTCCACCTGCGGTGGCTTATTACCAGCCTTACCCTTTTGTTGGTGGTGCAAATGTTGGTCCAGTGAATTGTCAGCCTTACCCACCACAGATGCCGCAACCAGAATATCAAATGCTCGAGTCTCCTCAGTTATGGCCGCGGTCACAGTTTGTTTTGGCCCCTCAATATAATTCATTTCCTGATCAAAATGGTAATTTTGTTCCAATTGCACCGCATCCTGTTGCACCTGTCTATGGAGAACAGTATCCATCTCAAGTTTACAATGGATCTAATAGTGACAGGGTAGTGAGGTTGGCCCCTTCTGCTACCAAGGAAGCAAGGCAGAAGAGGATGGCAAGGAAAAGATGGGGTTCATTTCACCGCAATCAACCTCACCAAAATCAGATTCAGAAGACTGATTCACCGGAACAAATTAGTGAAAAGAAGCTTGGTGCAGAAAATTTCACCAACAGCATCAACGGACAATCCAGCCCTGTCAATTGGCTCTACTGGCCTGCTGTTGGGCCTCCAAAGTTAGCACAGCCTCCTATGGCAGCACAATCTCAGCAACCGGATCAGTATCAGCAGGGCTACCCAACCTTCCTACCAGTAAAAGCACAGAGCAATCGTCGACCGGCACAACAGCAACAAAAGAAACAGGGGTTTAAAGGTGAGAAGAACTTGAAATTTCTGTTACAAAAGGTGTTGAAGCAGAGTGATGTTGGTTGTCTTGGAAGAATTGTATTGCCTAAAAGAGAAGCTGAAACTCAACTTCCACAACTAGAAGACCGCGATGGCATACAAATTGTCATGGAAGATATAGGAACTTCGAAGGTCTGGAACTTGCGCTACAGATACTGGCCGAATAACAAAAGCAGGATGTATGTCCTCGAAAATACAGGAGAGTTTGTGAAGGAAAATGGACTCCAAGAGGGTGATTTCATAGTCATCTATTCCGACATCAAATGTGGCAAATATCTTATACGAGGAGTGAAGGTAAGGCAACCCGTGAAGGGGAAACTCGAGGCCAAGGTAACGAGGAAACACCATAGCAACTCTGGAGCTGGCACCGACATTCCTCAAAACCATAGCAACTCTGGAGCTGGTACCGACATTCCTCCATATACACCATCAAATTAA
Protein Sequence:
- >DCAR_004706|Daucus_carota|B3|DCAR_004706
MKGEHGDVDEVMEAFGEEIWRGSEESSIFCDVFPALPDFPCMSSTSSSSSNPALNRQFVSSSASSGCSASSSAVVKSDGNLRSVKYEVDVSPSALSSTDCMGVMEEFGYMDLIEDGNEGWDPSSIFRNDDETNVGEELIDQGGFKEEERVEEEMGLDELGVMFFEWLKTNKEHISAEDMKNIRFKKSTIECAYKRMGSSKEGKKQLLKLILEWVEQYQLQKKRSREAAEAAAEAASSHQVPCLYQEPNPNPNPNSNFVNFMPTPGANACMWIPIPQSSSIDPPAVVPSGPAPPAVAYYQPYPFVGGANVGPVNCQPYPPQMPQPEYQMLESPQLWPRSQFVLAPQYNSFPDQNGNFVPIAPHPVAPVYGEQYPSQVYNGSNSDRVVRLAPSATKEARQKRMARKRWGSFHRNQPHQNQIQKTDSPEQISEKKLGAENFTNSINGQSSPVNWLYWPAVGPPKLAQPPMAAQSQQPDQYQQGYPTFLPVKAQSNRRPAQQQQKKQGFKGEKNLKFLLQKVLKQSDVGCLGRIVLPKREAETQLPQLEDRDGIQIVMEDIGTSKVWNLRYRYWPNNKSRMYVLENTGEFVKENGLQEGDFIVIYSDIKCGKYLIRGVKVRQPVKGKLEAKVTRKHHSNSGAGTDIPQNHSNSGAGTDIPPYTPSN*