Information report for DCAR_003838
Gene Details
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Functional Annotation
- Refseq: XP_017253430.1 — PREDICTED: B3 domain-containing transcription factor VRN1-like
- TrEMBL: A0A166IIZ5 — A0A166IIZ5_DAUCS; Uncharacterized protein
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Beta vulgaris: Bv5_121620_pazn.t1
- Cajanus cajan: C.cajan_27838
- Fragaria vesca: mrna29444.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_34095_BGI-A2_v1.0, Cotton_A_35970_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D03G1685, Gh_A02G1527, Gh_A12G0629, Gh_D12G0646
- Juglans regia: WALNUT_00011203-RA, WALNUT_00005007-RA
- Malus domestica: MDP0000236750
- Manihot esculenta: Manes.10G031300.1.p, Manes.07G115200.1.p
- Ziziphus jujuba: XP_015890081.1
Sequences
CDS Sequence:
- >DCAR_003838|Daucus_carota|B3|DCAR_003838
ATGTGTAACCACAGTCTTACAGATAGGATTGTTATTGTAATGCATATGTTACAGATGATTCCGAAAAAATTTGCAAGTATACACGGCAAGAACCTGGATGACAAAATTTCCTTGAAGGTTCCAGGTGGTTCAGTTTGGCCGATTAAATTAAAAAGACACAAGAACAAGGGTGACTCTAAATTTCAAGTTCTTGTATTTGACCCAAGTGGTTTAGAGACAGACTATCCACTAACTAGTACTACTGAGAATCGTAATGTTGTTAGATTAGGCCGAGCTAAGAAGAGAGTAGTTGATAGCGATGATTCAACTAGTGTCGATGTGGTTAGGCCCTGTAAGAGGACAACAGCAAGCTCTTCTTGCAAAGCAGGCGAGGATGGACCAAAAGTTAAGCAAGAAAAAGCAGAAAGAAACGGTGTAGCTCTTGCCTCAGCTAAAGCTTTTAAATCCAAGAACCCCTCTTTCATCCATGTTATGAAATCATCGAATGTTGTTGGAGCATGGCCTAATGTGTACATAACAAATACGTTTAAGGAGGCCTATAAGAAGTGGAAGAACAACGACAAGGTTATCCTACGAGTAGAAAACAGACGGTGGACAGTATATTGCAGTGTGAATTCCAATCAGTGTAGATTTGGCCGTAAATGGGGTAAATTTGCCCGAGAAAATTCACTGAATGTAGATGATGTTTGTGTTTTTGAGTTGATCAACCCCTCAAGAAAATTGCTACAAGTCTTGATTTTCCGAGAAGAAGAAACCAGCTTGCAAGTTGATCTATGGATTCATATTTATGTGCAGATGATTCCCAGAAAATTCGAAAGGCTTTTTGAGAAGAACCTTGACAATCGTATTCAGTTGAGTGTTCCAAGTGGTTCAGTTTGGTCGATTGATTTAGAAAAACAACAAGACAAGGTCTGGCTGCAAAATGGTTGGCCGGAATTTGCTAAGTTTTATTCCATAGGTTTCGGTTACCTTCTGGTTTTTGAGTACCAGGAAGATTCTAAATTTAAAGTACTTATATTTGACCCAAGCGCTTCAGAGATTGACTATCCAGCAAATTGTAGTACCACTCTTGAATTTGTGAAATCAACCAAAGTGGAGAAGAAGAGGGAAAATGAGTTTAATATTTCAGATGATTCGGATGAAATTAGCCCTCGGAAGAGAACTAGAGCAAGCTATTCTTGTATAGCAAATTCTAATGGGAAATCGGCCTGCAATGTGAAGAAGGATCCCGCGCTTGCTGCTGCTAAGGATTTTAAGTCCGAAAAGCCTTATTTCATTGTTTCTATGACACCATCACATATCAAAGGATCGTCTGGAATGCATATAACGAAGACCTTTGAAGAGGTTTATAAAAAGTGGATGAAGAATGTTGAAGTTATTTTAGAAGTTGGAGGGAAAACTTGGCCGGTGTTTAGTTATTTTAATTTGAGCAACGACCGATGTGCTTTTAGGCATGGATGGGCAGACTTTGCACGAGACAATTCGCTGAAGGTTGGCGATGTTTGTGTCTTTGAACTGATCAACCCCTCTAAAAAATTGCTTAAGCACTCAAGCCCAGAGCATAGTGACTACGAAGCTTTGGAAATGGGAGACATTATTCAAGTCCCTGCATGCATGGATCCTTTGGTGAAGCCCCGCTACTTCTTCAAGATGATTGTGTCTACTATTACCCCTCATAGTAGACTAATGATTCCCACAAAGTTTTTGACTACATGTGGAGATGACTTGGCAGACTTTATTTTTCTTGAGGCCCCGGCTGGTTCAATTTGGCAAGTGAAACTGGAGAGAAGTGATTCTCAGGTTTGGCTTCAAAATGGCTGGCCCGACTTCGCAGAACATTACTCCATATGTTTTGGTCACTTATTAGTATTCAGATACAAAGGAAATTCACACTTTCATGTAATCATAATGGACAAGAGTGCTACTGAGGTAGAGTACCCCTTGAGTGCTACTAGTCATAGTGAAGAAACTGACCATGTTACGGGCTTGGGCAAGGGAAAAGAAGTTGCTGCTGATGATATTGGAAGAAGAGAGGATTTTACAATTTGTTTGGCATCATCTGCGCAGTATACAAAAACAGTTTTGGCTTCTGCAGAAGCCAGCCATCAGGTAAACCAGAAAGCGCTGCAGGTAACAAGTGAAGCTGAAGTATCAGCTAAAGCATTCCGATCCGAAAACCCCTTCTTCAAAATCAATATGCGTCCCTCTTATGTGGATGGAAGATGCTTGTCTGTGCCAAAAATATTTGTCACTACACATATAACACGGGACCATTGCAATGTTATCCTTCAATCATCAGACGGAAGATCCTGGCCAGTAAAGTGCACAACATCTCGTAGTTATCGTACAGCAGCCAGATTTACTAGTGGTTGGCGAAATTTTGCTCATGCGAATAGCTTGGCAGGAGATTCCAAGTTTCTAGTACGCATATTTGATCCAAGTGCTTCAGAGATAGACTATCCGTTAGCTACCACTAAGATTCCAAACTCTGTAAAATCGAGGTCCAAAGTGAAGAAGACAGTAATCGATATTGATGACACAACCAGTTCTGAGATGATAAGGCCTTCTAAAAAGATAAGAGCAAGCTCTGCTCCTATAGCAGCTCGCAATACTGGACCAAAATTGCAGCACAAAAAAGCAATGGAAAATGATGAGCCAGCACCGGCCAGTAAGGAGGACAAAGATAGAGCACTTGCATCAGCTAAGGCTTTCAGATCCAAGAACCCCTTTTTCATTCATGCTATGAAACCAATTTATGTATACGAGAACGGGTCTGGAGTGTATATACCAAAAACTTTTAAAGAGGCTTATAAGAAGTGGAAGTACCAAAACCAGATCCTCCTTGAAGCTGAAGGAAGAATTTGGCCAGTTACTTGTAGTTTGTACTCACATTGCAACCAGTGTAGAATTAGACAAGGCTGGGCTCAATTTGCAAGAGACAATTCACTAAAAGCAGGTGATGTTTGTGTATTCGAGCTGATCAACCCCTCTACAAAACTGTTGCAGGTGTTAATTTTTCGAGCAACAAAGGAAGCTGAAAATCTGGAGTGCTTGCATCATCTGAAGCTTTAA
Protein Sequence:
- >DCAR_003838|Daucus_carota|B3|DCAR_003838
MCNHSLTDRIVIVMHMLQMIPKKFASIHGKNLDDKISLKVPGGSVWPIKLKRHKNKGDSKFQVLVFDPSGLETDYPLTSTTENRNVVRLGRAKKRVVDSDDSTSVDVVRPCKRTTASSSCKAGEDGPKVKQEKAERNGVALASAKAFKSKNPSFIHVMKSSNVVGAWPNVYITNTFKEAYKKWKNNDKVILRVENRRWTVYCSVNSNQCRFGRKWGKFARENSLNVDDVCVFELINPSRKLLQVLIFREEETSLQVDLWIHIYVQMIPRKFERLFEKNLDNRIQLSVPSGSVWSIDLEKQQDKVWLQNGWPEFAKFYSIGFGYLLVFEYQEDSKFKVLIFDPSASEIDYPANCSTTLEFVKSTKVEKKRENEFNISDDSDEISPRKRTRASYSCIANSNGKSACNVKKDPALAAAKDFKSEKPYFIVSMTPSHIKGSSGMHITKTFEEVYKKWMKNVEVILEVGGKTWPVFSYFNLSNDRCAFRHGWADFARDNSLKVGDVCVFELINPSKKLLKHSSPEHSDYEALEMGDIIQVPACMDPLVKPRYFFKMIVSTITPHSRLMIPTKFLTTCGDDLADFIFLEAPAGSIWQVKLERSDSQVWLQNGWPDFAEHYSICFGHLLVFRYKGNSHFHVIIMDKSATEVEYPLSATSHSEETDHVTGLGKGKEVAADDIGRREDFTICLASSAQYTKTVLASAEASHQVNQKALQVTSEAEVSAKAFRSENPFFKINMRPSYVDGRCLSVPKIFVTTHITRDHCNVILQSSDGRSWPVKCTTSRSYRTAARFTSGWRNFAHANSLAGDSKFLVRIFDPSASEIDYPLATTKIPNSVKSRSKVKKTVIDIDDTTSSEMIRPSKKIRASSAPIAARNTGPKLQHKKAMENDEPAPASKEDKDRALASAKAFRSKNPFFIHAMKPIYVYENGSGVYIPKTFKEAYKKWKYQNQILLEAEGRIWPVTCSLYSHCNQCRIRQGWAQFARDNSLKAGDVCVFELINPSTKLLQVLIFRATKEAENLECLHHLKL*