Information report for Cla001807
Gene Details
Functional Annotation
- Refseq: XP_008440208.1 — PREDICTED: uncharacterized protein LOC103484737 isoform X2
- Refseq: XP_008440213.1 — PREDICTED: uncharacterized protein LOC103484737 isoform X6
- TrEMBL: A0A1S3B0K0 — A0A1S3B0K0_CUCME; uncharacterized protein LOC103484737 isoform X6
- TrEMBL: A0A1S3B1B6 — A0A1S3B1B6_CUCME; uncharacterized protein LOC103484737 isoform X2
- STRING: XP_008440207.1 — (Cucumis melo)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn210521
- Citrus sinensis: orange1.1g023721m
- Cucumis melo: MELO3C007522P1, MELO3C007521P1, MELO3C007523P1, MELO3C007524P1
- Cucumis sativus: Cucsa.102040.2, Cucsa.102040.1, Cucsa.102050.14, Cucsa.102050.1, Cucsa.102050.2, Cucsa.102050.10, Cucsa.102050.13, Cucsa.102050.15, Cucsa.102050.11, Cucsa.102050.16, Cucsa.102060.1
- Juglans regia: WALNUT_00011204-RA
- Populus trichocarpa: Potri.007G035500.2
- Ziziphus jujuba: XP_015890103.1
Sequences
CDS Sequence:
- >Cla001807|Citrullus_lanatus|B3|Cla001807
ATGCTTCCCAAGAAGTTCATTACTGACTATGGAAAATTCCTTTCAAATTCCATTTGCCTCAAGCTTCCTGACGGCTTGGAATGGAAGCTTGGGTCTAAAACAGCTAACGACACCGTTTGGTTACAAAATGGGTGGCAGCAATTTTCAAATCATTACCGTTTGAAACCTGGCTCGCTTTTGGTTTTCAGATTTGATGGAAACTCTACGTTCCAAACTTGTATTTTTGACCAGACATGTTTAGAGATTCAATATCCTTCCAACAATATTGGAAAGACAAAACCCGACGATGAAGAATTCAATGGATATCGATACGAGGAGGTTGAAACAAACAATCATGAAATCAACGACTTGAAACCTGAAAAGATAGGTTTTAAAATTGTTGTGAAGAAATCAACCGTGGAAGGCCGCTATAACATGCTTATTCCTAAACATTTTGCAAGTAAACATTTGAAAGAGGAGTTTGGAAGGATAGAAATTGAAAATTCGGATGGAGAAAGTTGGGCAATGTCATACAAATGGAGCCAAAGTCGTAATGTGGCGGAATATGTTTATATTTCAAGGACTACTTTCTCTCCGCCCATTTCAGCAAAGAACACAAATGTGAAAATTACAACTCCCAATAATAATCTCTTCTTCAAAGTCAATATCCACAAGAAAAGCTACAAGAACTCTGTTTTGAGCATACCGCCAGCTTTTATGAAGCATTTAAATGGAACCTTTCCAGAAAAAGCTACCATCCAAGATCATACGGGAAAATCATGGTGTATTACATTGGAAAAACTGGATGACCTTCTGTATTTCAAGAATGGCTGGCAGACTTTTGTAGATTACCATTCCCTGAAATATGGAGACTTCTTAGTTTTCCAATATGACGGCCACTGTACATTTGATGTTACGATATTTGGTAAAAATGGATGTAAGAAGGCAGTGGCAGCAAAAGATGCTAGTTCTGTCCCAATTTTGGAGGCTGAGATAGCTGAAGCTGGTAATTCTGTTTCAAATTTGGAGGCTATAGTAGCAGATGCTGGTAATTCTGTTTCAAATTTGGAGGCTGTGGCAGCAGATGCTGGTAATTCTGTTTCAAATTTGGAGGTTGTGGTGGCAGATGCTGGTAGTTCTGTTCCAATTTTGAAGGTCAAAGAAGAGCCTGTGGTTGAGGAAGAAGATGTCGAACCTTCAATTTCTCACAAGAGGAAGCGATTACAAGTTGGATCAGATACAGTTCGTAAGTCAAAAAGCATTGTAGCTTCAAATTGTGGTAGAGCTGGCAATGCTTCGAACTCTGTAGAACAGGTTAGCCCAAGAGGGCTTTTCTTTGAGCGGACGATGAAACGCTGGTCGCGTCAGACAATTTATATTTCTGGACGTGTGGTGAGGGATGAGAACATCTCGTTGAAGCCAAACATAGTTCTTAGGGATGAAGAGGGTACATTGTGGCCAGCAACAGTCTCTTTCACTAGCCAGAATCGTATTTCTGTTACTGCTGGATGGTCTAAATTTTACACCGGCCATAAGTTGAGAATAAATGACAAATGTGAGTTTGAGTTTGTTCTTGAAAGGGGAAATGTGGAGGAGCCCTTCCATTATATGCCTTTCTTTGGAATAGAGAATTTCAGGATTGAACCCTTCGAGATAATTCCAGTACGAATAAATCCAGAAGTTAGAAAGTACATTGAGTATAGCCAATTTCAAGAACATAGCAGGGAGATGACTTGTAGCCAATTTCATTCATCGTCTGCAAATGAAGAACCAAAATACATTCAATTTGAGCATGAGGGAGTTGATAGTCAACAACATGATCAATATTTCCAAGATGATGACCTTCAGGAGGATATTCTAAGTGAAGGAGTTGATATGGACATAACAAATGAACTACCTATTAGTCAATCACAAGAAATACTGTATTTGGAGTATCAACCCCCTCAAACAGATAAAGAAGACAATTGGAAATCAGCCAATACGGATACTACTGAGCTTGGTGGGAATTCATTTGATATTAAAGAGAATAATATGGATACTACTACTGAGCTTCGTGAGAATTCATTTGGTATTGAAGAGAATAATATGGATATTACTGAGCAGCTTGGTGGGAATTTATTTGATATTGAAGAGAATAATATCAAACAGGAAAAACAGTCCCCTGTAACTGTCAAGGCTACCAGAAAGATGAAAAAGAGAAAATCGAGAGAGACGACGAGCTTTGAAGTGCAAGAACAAAACGAAGAGACTTCCGAAATTGATACGGATCAGGACTCTAGGAGGAATGTGGTAACAAAGCAAAAGAAGAAAATTTCTGAACAATCCAAGGAGGACGATGGTAAGAGAAAGACACGATCAAAGAGGGTAAAGAAATCAAGAATTTCTGGTACGCCTTCTGAACATGATGATGAGGTGGATGTTTATAAGTTTGATATTCAGCCTCTTATAGCAACAAAAACAGAAATGGAAATGCCATATATGATACCATTTGGTGGGGTTAAGCCATCAAAAGAAAAGGGTAAATCGCCAGTGGATCAAGAACACAACAGTGATGCTAGAACTTCGTACAACAATGATTACTGTAATATGAAAGGACCACAGTCTGTTTCAAATGACGGCGTCAAGAATTTTTTGTTCACTAAGATAGTCAACATAGAGGAAATTTTGGGCAGTTTGGTTCATGACATAGATAACCTAAAGAATCTCTTTTCAAAAGTGTGTGAAAATGTAAACGAAGCTGCAGATCCTGAAAAGATGAGGGAAGTGCTCTTCTCACAGAAAGTAATGGAAAGGGGAAAGCGAGATGAACACAACCATAGTATACCACCTGCTTTTGTGAAGTATTTTAATGGAAGAATACCAAGTGAAGCTGTTATCAGAGATCAAAGCAGACAATCTTGGCATGTTACCTTGGAAGAACTGAAGAATGTTGTGTTTTTCAAGGATGGCTGGCAAGAATTTGTTGAGAGCCACCTCTTGAAACTTGGAGACTTTTTAGTTTTCCAATACGATGGGAGTCATATGTTTGATGTTAAGATATTTAGTAAAAATGGATGCAAGAAAGAGCGAGTATCAAGAACCGGATGTCCTTGCGCGGTTGTGAAGGTCAAAGACGAGCCCCAATCTGAGCACAATTATAGTACATCATTAACTCGTTGCAAAAGAAGTGATTCAGAAGTTAGATCCACTGATAGTTCAGGCACTGCCCCTAAATCAAGGAGAAGATCAACATCAAATCTTGAAGAACTTAGTCCCTCTAAGACTGCAGAACATATTTCGATGGAATCACCAACCTTCGAGCTCATGGTTAAGCGTTGGTCACATAACGCTATTCATATTCCTAAAACGGTGATGGTTACCCATAACATCTCACTGAAGCCAAATTTGGTTATTGTAAATGAAAGGGGCAGGTCATGGCTGGTGACAGCAAAGCCAATTAGCCGTGGTCGGTTTGCATTGACCACTGGCTGGCCTGCTTTCTTCAGGGCAAATAGCTTGAGAGAAGATGACGAATGTATATTTGAGTTTGTTCTTGATTCAAATAACCTTTGCGGAGAACTAAAGGTGAAAATCACCCGCAGCCTGGAAATAACTCAAGAAAAACAGGCAACAATGGTGCCAGAAGGATGA
Protein Sequence:
- >Cla001807|Citrullus_lanatus|B3|Cla001807
MLPKKFITDYGKFLSNSICLKLPDGLEWKLGSKTANDTVWLQNGWQQFSNHYRLKPGSLLVFRFDGNSTFQTCIFDQTCLEIQYPSNNIGKTKPDDEEFNGYRYEEVETNNHEINDLKPEKIGFKIVVKKSTVEGRYNMLIPKHFASKHLKEEFGRIEIENSDGESWAMSYKWSQSRNVAEYVYISRTTFSPPISAKNTNVKITTPNNNLFFKVNIHKKSYKNSVLSIPPAFMKHLNGTFPEKATIQDHTGKSWCITLEKLDDLLYFKNGWQTFVDYHSLKYGDFLVFQYDGHCTFDVTIFGKNGCKKAVAAKDASSVPILEAEIAEAGNSVSNLEAIVADAGNSVSNLEAVAADAGNSVSNLEVVVADAGSSVPILKVKEEPVVEEEDVEPSISHKRKRLQVGSDTVRKSKSIVASNCGRAGNASNSVEQVSPRGLFFERTMKRWSRQTIYISGRVVRDENISLKPNIVLRDEEGTLWPATVSFTSQNRISVTAGWSKFYTGHKLRINDKCEFEFVLERGNVEEPFHYMPFFGIENFRIEPFEIIPVRINPEVRKYIEYSQFQEHSREMTCSQFHSSSANEEPKYIQFEHEGVDSQQHDQYFQDDDLQEDILSEGVDMDITNELPISQSQEILYLEYQPPQTDKEDNWKSANTDTTELGGNSFDIKENNMDTTTELRENSFGIEENNMDITEQLGGNLFDIEENNIKQEKQSPVTVKATRKMKKRKSRETTSFEVQEQNEETSEIDTDQDSRRNVVTKQKKKISEQSKEDDGKRKTRSKRVKKSRISGTPSEHDDEVDVYKFDIQPLIATKTEMEMPYMIPFGGVKPSKEKGKSPVDQEHNSDARTSYNNDYCNMKGPQSVSNDGVKNFLFTKIVNIEEILGSLVHDIDNLKNLFSKVCENVNEAADPEKMREVLFSQKVMERGKRDEHNHSIPPAFVKYFNGRIPSEAVIRDQSRQSWHVTLEELKNVVFFKDGWQEFVESHLLKLGDFLVFQYDGSHMFDVKIFSKNGCKKERVSRTGCPCAVVKVKDEPQSEHNYSTSLTRCKRSDSEVRSTDSSGTAPKSRRRSTSNLEELSPSKTAEHISMESPTFELMVKRWSHNAIHIPKTVMVTHNISLKPNLVIVNERGRSWLVTAKPISRGRFALTTGWPAFFRANSLREDDECIFEFVLDSNNLCGELKVKITRSLEITQEKQATMVPEG