Information report for Cc06_g00410
Gene Details
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Functional Annotation
- Refseq: XP_027069391.1 — B3 domain-containing transcription repressor VAL2-like isoform X4
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A068UCW0 — A0A068UCW0_COFCA; Uncharacterized protein
- STRING: XP_009768196.1 — (Nicotiana sylvestris)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA10g08330
- Citrus sinensis: orange1.1g003027m, orange1.1g003019m
- Manihot esculenta: Manes.09G117700.1.p
- Nicotiana benthamiana: Niben101Scf03404g01010.1
- Nicotiana tabacum: XP_016435545.1, XP_016433628.1, XP_016435546.1
- Petunia inflata: Peinf101Scf00642g03015.1
- Solanum lycopersicum: Solyc10g075030.1.1
- Vitis vinifera: GSVIVT01030182001
- Ziziphus jujuba: XP_015897449.1, XP_015897448.1
Sequences
CDS Sequence:
- >Cc06_g00410|Coffea_canephora|B3|Cc06_g00410
ATGGATTCCAAGGTATGCATGAACCAGCAGTGCACTTCGTCCTCATCCTCGTCTTCAATTGATCTCAAAAGGGGTTGGCCTTTACGATCCGGTGGCTTCGCCACTCTCTGTCACCATTGCGGCATTGCTTATGAACAATTAGTCTTCTGCGACAAGTTCCACTCAAACGACTCTGGTTGGAGGGAATGCACAACGTGTGGTAAGACTTTGACTGGTGAAAAAAATAAAGATTGCAGAGTATTCTCAGCAGATGATGGCGGGGGAAAGCAATTCACTACTGTGGGCAGTCAGTCAAATGTTGGTATTACTGACAAGATGAAGCTTGTTCAGTTCGGTGATGATGCAGGCAGTAGTGACCAATCACAGTTGTTTCTGTCTCAGACAGATGATAGGATTGAGTCTCTTGGGCAGAGGAAAATGAAAGAAAATTTTCTTACATCAGGAGAATTTGGAAGCCCCTTTTTGTCAGTTTTAAATCAGACATCAGTTGAAGCAGCTCAAAATGCCCAATTAAATGAATATAAGGAATATATGCCGATTAAAGATACTCACGGTTCATCAGTTCAAACAAATTTAACTATATCACCTCCTGCTACATCAGGAGATAAAATTTTTTTACCTGCAGTGGTTGCTGAAGAAAGGCCACTAAACAAGAAGAGTTCTTCCTTTTCGCAGGGGTCTAGATCTCGCCATCTCTTGCCCAAACCTGTAAAATCTATTATGGCTGCAGGCTTGGAGGCAAATGTTAGCTCACTTACCCAGTTAAGGGTGGCAAGACCACCTGTTGAAGGAAGAATTAAGAACCAGTTGCTTCCTCGTTATTGGCCCAGGATAACAGACCAGGAGCTGCGGCAAATATCTGGAGACTCGAATTCCACTGTCGTTCCTTTGTTTGAAAAGGTTTTGAGCGCCAGCGATGCTGGTCGAATTGGTCGATTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTTCCACCAATCTCTCAACCAGAAGGCCTTCCTTTGAGGATTCAGGATGTTCAAGGCAAAGAATGGGTGTTTCAATTCAGATTTTGGCCAAATAATAACAGCAGAATGTATGTCTTAGAAGGTGTAACCCCTTGCATACAGTCAATGCAATTACAAGCTGGAGATACTGTGACCTTCAGTCGCATGGATCCTGAAGGAAAACTTTTAATGGGTTTCAGGAAGGCTTCACTTATGCAGGATAATAAACATCTGTCTAGCATCCCGAAGGGCTCTTTTTCAAGTGAACCATTCTTTTTGCCTGGTGCTGATAATCTACATTCAGCTAACAGTCAGTCTGCCCTTCTTGACTCGGTTAAAGGAAGCGGGGTTTTTCCTCTGAGTGCATTGTCAAAACATTTCAGTGCTGTGGAGTTTGGCTGGCACATAGCTGAGATGAATGGTGAAAAGACTCTGGATGGCATATTTCCATCACCCATGCTAGTTCCAGAGCGCAAAAGAAGTCGGAATATTGGGTCAAAAAGCAAGAGATTGCTCATTGATAGCCAAGATGCTTTTGAGCTGAAACTTTCATGGGAAGAGTTACAGGACATGCTCTGCCCTCCACCGTGTGTTAAGCCAAGCACTGTTGCAATTGAGGATCATGAATTTGAAGAATATGATCAACCACCAGTTTTTGGGAAGAAGAGCATTTTCACCATGCGCCAATCAGGGGAGCAGGAGCAATGGGCTCAATGTGATAGTTGCTTAAAATGGAGAAGGCTGCCAGTTAATGTTCTTCTCCCTCCTAAGTGGACATGTCAGGAGCACACCTGGGCTCTAAGCAGGCCATCATGTTCTGGACCAGAGGACCTGAGTCCCCATGAGCTTGAGAGTCTTCTGAAAATGAGCAAGGAACTCAAAAAGCAGAAAATTGCGTCAGGCCTTAAGTCAGCCCATGAGCATGAATCCTCTGATCCAGATGGTCTGGGAAATTCCAAGGCTGTTCGTGGTGATACAAGTGGGACGTCTGCTGCATCAATTGCAACAACTACAAAGCACCCCAGGCATCGTCCTGGCTGCTCTTGCATTGTCTGCATTCAGCCTCCTAGTGGCAAGGGTAAACACAAGCCCACATGTACATGCAATGTCTGCATGACTGTAAAGCGACGCTTTAAGACCCTAATGATGCGCAAAAAGAAGCGTCAATCAGAACGAGAAGCAGAAATCGCACAAAGGAACAAGTTTGATTGGGTTTCCAAGGAAGAAGCAGAAGTTGAGAGCTACCAACAACTGGAAATTGGAAAAGAGCAGTTAGACTTGAATTGTCATCCAGACCGTGAAAATTTGCAGCAGAGTTCATCCCGTGTCAGCATGGTGAGTCTTCTCCAAGAAGCCAGTCTACCTTTGCAAACCTATCTAAAGCAGAATGGTCTTACAAGCTTGGTTTCTGATCAACGAGTGAGTTCAGGGTCTAATGTGCTCCTCCCACAAGTTACTAGAGAGAGTGAGCTACAATTTGATGAGGACCAGTGTCTTTCTCACGAGATACAGGAGCAAGAAGTAAAAGAGGAACTTTCAGAAACAGATCAAGCTGGAAATGATCCTTCATGA
Protein Sequence:
- >Cc06_g00410|Coffea_canephora|B3|Cc06_g00410
MDSKVCMNQQCTSSSSSSSIDLKRGWPLRSGGFATLCHHCGIAYEQLVFCDKFHSNDSGWRECTTCGKTLTGEKNKDCRVFSADDGGGKQFTTVGSQSNVGITDKMKLVQFGDDAGSSDQSQLFLSQTDDRIESLGQRKMKENFLTSGEFGSPFLSVLNQTSVEAAQNAQLNEYKEYMPIKDTHGSSVQTNLTISPPATSGDKIFLPAVVAEERPLNKKSSSFSQGSRSRHLLPKPVKSIMAAGLEANVSSLTQLRVARPPVEGRIKNQLLPRYWPRITDQELRQISGDSNSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVQGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLLMGFRKASLMQDNKHLSSIPKGSFSSEPFFLPGADNLHSANSQSALLDSVKGSGVFPLSALSKHFSAVEFGWHIAEMNGEKTLDGIFPSPMLVPERKRSRNIGSKSKRLLIDSQDAFELKLSWEELQDMLCPPPCVKPSTVAIEDHEFEEYDQPPVFGKKSIFTMRQSGEQEQWAQCDSCLKWRRLPVNVLLPPKWTCQEHTWALSRPSCSGPEDLSPHELESLLKMSKELKKQKIASGLKSAHEHESSDPDGLGNSKAVRGDTSGTSAASIATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNKFDWVSKEEAEVESYQQLEIGKEQLDLNCHPDRENLQQSSSRVSMVSLLQEASLPLQTYLKQNGLTSLVSDQRVSSGSNVLLPQVTRESELQFDEDQCLSHEIQEQEVKEELSETDQAGNDPS*