Information report for Cc02_g18670
Gene Details
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Functional Annotation
- Refseq: XP_027105925.1 — B3 domain-containing protein Os01g0234100-like
- TrEMBL: A0A068TP84 — A0A068TP84_COFCA; Uncharacterized protein
- STRING: XP_009612763.1 — (Nicotiana tomentosiformis)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn006251
- Capsicum annuum: CA06g06370
- Malus domestica: MDP0000155544
- Nicotiana benthamiana: Niben101Scf01272g00004.1
- Nicotiana tabacum: XP_016475708.1, XP_016513019.1, XP_016475707.1
- Prunus mume: XP_008236526.1
- Prunus persica: Prupe.8G122800.4.p, Prupe.8G122800.3.p, Prupe.8G122800.2.p, Prupe.8G122800.1.p
- Sesamum indicum: XP_011092581.1, XP_011092580.1, XP_011092583.1
- Solanum lycopersicum: Solyc06g034140.1.1
- Solanum melongena: Sme2.5_01478.1_g00002.1
- Solanum tuberosum: PGSC0003DMP400037417
Sequences
CDS Sequence:
- >Cc02_g18670|Coffea_canephora|B3|Cc02_g18670
ATGGTAGGGATGCATGATCTTTGTGGTCAAATTAAGGTTACATCATCAGTTATGCAGCGAGCTGAAGCAGTCCAAGAAACTCTTGATGCCAAGTTTCCTAGTTTTGTGAAGCCAATGATCCGATCTAATGTTAAAAAAGGTTTCTGGCTGTCTCTTCCAAGGCTATTCTGCAAGCTTCATTTGCCTGATCATGACACAACAATTGTTTTGGAGGATGAGAATCGTAAAGAGTACATCACGAAATATCTTGCTCAAAGAAGGGGCCTTAGTGCTGGATGGATGGGATTTTCAATTGCACACAAGTTAGTTGAGGGAGATGTTCTGGTATTTCATATGGTTATTGCCAACAAACTAAAGGTATACATAATAAGATCCAGTCGTTTGGCCGAAGTTGATGCAGCTCTTTGTCTTTTGCAATTAGAGGGCCCTGCAACGGGAAACGAATCTGGACATAGAGGCGATGATTGCAGAGATCCCCAACCTACTGGAGAAAAGAGTAAAAGTTCTTCACAACCAGAGAGCGAGAACATTTCTGACAAGGATATGCTAGATAACAATTTGGGGCTGGTGATGGGTCGTCCTGAGAGCATTGACGAGCACCTTCAGCTAGCTCTGGAAGGAAGAAGAGGCTCCTTTTCTGTCTTGTCAAATCGCACTTCATGCTGGCAACCCACTCAAACAAAAAAAGAAAAATCTTGTATTAGCAGGCATTTATTTGAACCAACGGTAAAAATCTCCCCCCATCCCAAAATCCTTCCTCTAGAAGTTTTACCCCACCAAACGGTTGATTCATCTCTTTCTTTCTGTAAGAGAAAGAGTTTGATCAAAGGAAATACGGTAGAAGTACGAAAAATGGCCATCTCTCAGTTTTCTCCTTCTAAGAGAAGCCAATACGATCCGTCCACCAAGCTGAAACAGAGGAAGGCGTCGGAGTTCAAGAAGAAGCCGGTGAAGAAAAACCCTTGTGGCACTCAACATGACAAAATCAACAAAGGGGAAACTCACAACATCGAGAAGTCGTTGATAAGCTATGAAAAGATCGGGGACAAAACCGGTGATCATTCGGCTTATGGAAAACCCAAATCCTCTGTCCTTCACAGAGCACACGAGGTTCAAGCTAAGCTGCCATCTAATTTTCCTTGTTGTGTGAAGCACATGCTCCGATCTCATGTTACCGGTGGATTTTGGTTGAGTTTGCCTAAGCAATTCTGCAATATCCATTTGCCCAAGAAAGATGGTATTGTTGTTTTGGTGGACGAAAATGGAGAAGAATACAAAACAAAATACCTGGTGGAGAAGAACGGATTGAGTGGTGGATGGAGAGGTTTCTCTATTGCGCACAACTTGCTTGAGGGGGATGTCCTAGTTTTCCAATTGATTAAACCTTGTGTACTTAAGGTTTACATTGTTAGAGCAAATGGCTTGACAGAACTCGACGGAGCCATCTGCCTTCTGAATTTGGATTTTCAAGATAAATCAATTGATAGTGCGAACCTTAAAGAAGAAAATGAAGATGTGAAGAACTGTAAGACAGCAGAGCCAGACTACTCGGGACCTCTCGCTAATGTTCTTGAGAGAGGCATAGTTGCAGTAAGTTCAGGCCATATGCCGGAATCAGCCCGACGATCAGCTAGCGATAACAACGAATTAAGTCTGGAGGTTTTGGATGGCGTTAGATTTTCAGAATCGGATGTGCAGTTCAAAGATGTGAAGGGTTTCAATGGTTTCAGCATTCTTGTGGACGGCCTAGTCATAGACTCAGAGATACCTCTGCACCTACGAGCCAAGTATTATCAGCTCTGCTGCAGTCAAAATTCATTCCTTCATGATCATCTCATCAAGGGGCTGAACTGCAAGCTGGCTGCTGGAATAATTTCTGAAACAGTTAACATTGCAGATGCGATTAGAGCAGCCAAGCTGACGACTTCTTGCGAATACCTCCAAACATGGGACAAAACTCTCAAGGCTTTTGAGGATATGGGCATGGCGGTTGAATTTTTGCGTGCACGAATAAAGGCACTTATTTCTCTTCCAACCGAACAAGAAGAGAGCATGAAATCAAGGACAGCTGAGAGAGCTCAATTACAAGAGGAGATGAGAAATCTTGAAACCAAGCTTTTGAACGTGAAAGAGGTAATCGGGACTGTTGATGCTGATATAAAGGCTCTCGAGGTCCAAGAGGAAAATCTCGAGGAAATATTCAAGGAAAAAGCAACTGCACCTTGGTAA
Protein Sequence:
- >Cc02_g18670|Coffea_canephora|B3|Cc02_g18670
MVGMHDLCGQIKVTSSVMQRAEAVQETLDAKFPSFVKPMIRSNVKKGFWLSLPRLFCKLHLPDHDTTIVLEDENRKEYITKYLAQRRGLSAGWMGFSIAHKLVEGDVLVFHMVIANKLKVYIIRSSRLAEVDAALCLLQLEGPATGNESGHRGDDCRDPQPTGEKSKSSSQPESENISDKDMLDNNLGLVMGRPESIDEHLQLALEGRRGSFSVLSNRTSCWQPTQTKKEKSCISRHLFEPTVKISPHPKILPLEVLPHQTVDSSLSFCKRKSLIKGNTVEVRKMAISQFSPSKRSQYDPSTKLKQRKASEFKKKPVKKNPCGTQHDKINKGETHNIEKSLISYEKIGDKTGDHSAYGKPKSSVLHRAHEVQAKLPSNFPCCVKHMLRSHVTGGFWLSLPKQFCNIHLPKKDGIVVLVDENGEEYKTKYLVEKNGLSGGWRGFSIAHNLLEGDVLVFQLIKPCVLKVYIVRANGLTELDGAICLLNLDFQDKSIDSANLKEENEDVKNCKTAEPDYSGPLANVLERGIVAVSSGHMPESARRSASDNNELSLEVLDGVRFSESDVQFKDVKGFNGFSILVDGLVIDSEIPLHLRAKYYQLCCSQNSFLHDHLIKGLNCKLAAGIISETVNIADAIRAAKLTTSCEYLQTWDKTLKAFEDMGMAVEFLRARIKALISLPTEQEESMKSRTAERAQLQEEMRNLETKLLNVKEVIGTVDADIKALEVQEENLEEIFKEKATAPW*