Information report for Cc01_g17380
Gene Details
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Functional Annotation
- Refseq: XP_027174476.1 — B3 domain-containing transcription factor ABI3
- TrEMBL: A0A068U8A0 — A0A068U8A0_COFCA; Uncharacterized protein
- STRING: XP_009792996.1 — (Nicotiana sylvestris)
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g038867m
- Gossypium arboreum: Cotton_A_33861_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G1550
- Manihot esculenta: Manes.13G043500.1.p, Manes.12G043500.1.p
- Nicotiana benthamiana: Niben101Scf21140g00009.1, Niben101Scf01687g08001.1
- Nicotiana tabacum: XP_016433829.1, XP_016443113.1, XP_016443112.1
- Petunia inflata: Peinf101Scf00191g31018.1
- Populus trichocarpa: Potri.002G252000.1
- Prunus mume: XP_008235529.1
- Prunus persica: Prupe.8G207700.5.p, Prupe.8G207700.4.p, Prupe.8G207700.2.p
- Sesamum indicum: XP_011080160.1
Sequences
CDS Sequence:
- >Cc01_g17380|Coffea_canephora|B3|Cc01_g17380
ATGAAGCAAGATGAGCAAGTGATGAGCGTTAATGGTGGTTGCGGTGAGAGGGAGATCTGGTTTGGAAGAGATCATCGTGGTCATGATCAAGACAATAGTCTACTTGATGATGACGATAATGATGCTGATGTCAATAATGATCCTTGCTCCCTCTTCTACACTGACTTCCCTCCCATCCCCGACTTCCCATGCATGTCTTCCTCTTCATCATCTTCCTCCACTCCCCTCCCTGCCAGGGCCGTTGCTTCCACATCCTCCTCCTCTTCCTCCTCGTCCTCCTCCGCGGCTACTTCTTGGGCAGTTTTCAAGGATATGAATTGCATGAATGCGATGGAGAATTTCGGGTACATGGATCTGCTGGATAACAGCGATATCTGGGACCCCTGCTCAATTTTTGAGAGCGAAAACCATCATCAGCCTCTGGAGGAAGACGGAAATGATAATGGAAATGATGGCGGGCTATACTTTCTACAAGCAAACAGCGAGCTTGGTGTTATATTCCTGGAATGGCTCAAGCAAAACAAAGATCACATTTCGGCTGAAGATATGAGGAGTATCAAGCTCAAGCGCTCTACCATTGACTGCGCCTCCAAACGTCTGGGCAGCACCAAAGAGGGCAAGAAGCAATTGTTGAAGCTCATTCTGGAGTGGGTGGAACAATACCAACTTCACAAAAGAAGAGCCACAGAAATGGTAGTAATAACAAAAGGAACTCGCCAGAACAGTCATGGAGATGGCGTAGAAGCAGACTGCAGGATGAGCAAGAATGCTTCCGAAGCACTGCAAGCAGGGGACGACGGAGATGGATTAATAAAGGGCATGGATGTCATCATGGAAGAATCTGCCTTTCCTGCAACAGCATTTGATGATGATGAAGATCATATGAAGCAAGATGAGCAAGTGATGAGCGTTAATGGTGGTTGCGGTGAGAGGGAGATCTGGTTTGGAAGAGATCATCGTGGTCATGATCAAGACAATAGTCTACTTGATGATGACGATAATGATGCTGATGTCAATAATGATCCTTGCTCCCTCTTCTACACTGACTTCCCTCCCATCCCCGACTTCCCATGCATGTCTTCCTCTTCATCATCTTCCTCCACTCCCCTCCCTGCCAGGGCCGTTGCTTCCACATCCTCCTCCTCTTCCTCCTCGTCCTCCTCCGCGGCTACTTCTTGGGCAGTTTTCAAGTCAGAGGCGGACGATTCTTTCCACCCTAATTCAGAGGCAGAAATGCAGCGCTACCACCCCCTGGAGAGGCAGTGTGATGAGGTGGTGAATGCTGCTGCTCCGGCGGCGGCCTTGTCATCCACCGCCTCCATGGAGATTCTTCCACTACCTGATGACTACTGTAGCAACAGGGATATGAATTGCATGAATGCGATGGAGAATTTCGGGTACATGGATCTGCTGGATAACAGCGATATCTGGGACCCCTGCTCAATTTTTGAGAGCGAAAACGTTAACCCCCCACAACAAGATCACGATCACCAGTTTCAAGAACGGAAACCTGCACCATCAGCATACGGAAATGATAATGGAAATGATGGCGGGCTATACTTTCTACAAGCAAACAGCGAGCTTGGTGTTATATTCCTGGAATGGCTCAAGCAAAACAAAGATCACATTTCGGCTGAAGATATGAGGAGTATCAAGCTCAAGCGCTCTACCATTGACTGCGCCTCCAAACGTCTGGGCAGCACCAAAGAGGGCAAGAAGCAATTGTTGAAGCTCATTCTGGAGTGGGTGGAACAATACCAACTTCACAAAAGAAGAGCCACAGAAATGGATCCATCAACTGCTTGCCTTTCTCCCTCACCATCACCTTGGGTTCCACCTGCACCTCCATGCGAGTCTTGTCCTAACTCCCTCGCGGCGCCATTCCCGCCCACCATGGGAGGATATGCGCGTGATCCTTATTCTAGTGCTGCAGCGGCAACTGTTGCTGTTCCTGTTCCCGTGTCGAACCAAACTATGAATAATGCAAATCTATATCTCGTTCCAGCAGAATATCATCAACCCACGGACTCTCCTCAATCGTGGAGTGGACCATATTCGATGCCGCAGGCTCAGTACAACCCGTTCCCGGATAATACTAAACTTCCCGTGTCCGGCTCCCAAGCTCAAGCTCTGTATGCAAATCCATATCCGTATCAGGTTTTTGATGGGAGCAGTGGCGAAAGATTGGTGAGATATGGTTCTTCAGCCACCAAGGAGGCCCGCAAGAAAAGGATGGCACGCCAACGACGGATTTCTCTGCACCAATATCGGCATCATCATACTCACCAAAATCAGCCTCAGAGTCTAGTGAATGAACAACATGCAACGAGGATCCCTGCTGTTGGAGATGATTGCACCTCCAACTCTCGAGCTAATCCAGGGAATTGGATTTACTGGTCCCCTGCAGTTCCTCCGCCTGCTCCTGCTCCGATGGCTTCGACTATGCCGCCTTTGGTTTCATCTGATAAACCATCACATAGGCAAGCACCAACTCAACCGGTTCCATCATCTGATAGAAAGCAGAGTTGGAAAACGGAGAAGAACTTGAAGTTTTTGCTGCAGAAAGTGTTGAAACAAAGCGATGTGGGTAATTTGGGAAGAATTGTGTTGCCCAAAAAAGAGGCAGAAACGCATCTTCCTGAACTTGAATCAAGGGATGGAATCCCCATAGCCCTGGAAGACATTGGCACTTCTAATGTCTGGAACATGCGGTATAGGTTTTGGCCAAATAACAAGAGCAGAATGTACCTTCTTGAAAACACCGGGGACTTTGTGCGCGTAAATGGGCTTCAAGAGGGCGACTTTATCGTCATATACTCGGACACGAAATGTGGCAAATACCTGATAAGAGGAGTGAAAGTTCGGCAGCCAGGGTCAAAATCAGAGGCAAAGAAGCCGGCAAGGAGAAACCAGCGTAATGTGCCCCAAGCGGCCAATAACTTTGCATTTGCATCTTTCAAACAAACGGTGAAACGAACAACAAATTAG
Protein Sequence:
- >Cc01_g17380|Coffea_canephora|B3|Cc01_g17380
MKQDEQVMSVNGGCGEREIWFGRDHRGHDQDNSLLDDDDNDADVNNDPCSLFYTDFPPIPDFPCMSSSSSSSSTPLPARAVASTSSSSSSSSSSAATSWAVFKDMNCMNAMENFGYMDLLDNSDIWDPCSIFESENHHQPLEEDGNDNGNDGGLYFLQANSELGVIFLEWLKQNKDHISAEDMRSIKLKRSTIDCASKRLGSTKEGKKQLLKLILEWVEQYQLHKRRATEMVVITKGTRQNSHGDGVEADCRMSKNASEALQAGDDGDGLIKGMDVIMEESAFPATAFDDDEDHMKQDEQVMSVNGGCGEREIWFGRDHRGHDQDNSLLDDDDNDADVNNDPCSLFYTDFPPIPDFPCMSSSSSSSSTPLPARAVASTSSSSSSSSSSAATSWAVFKSEADDSFHPNSEAEMQRYHPLERQCDEVVNAAAPAAALSSTASMEILPLPDDYCSNRDMNCMNAMENFGYMDLLDNSDIWDPCSIFESENVNPPQQDHDHQFQERKPAPSAYGNDNGNDGGLYFLQANSELGVIFLEWLKQNKDHISAEDMRSIKLKRSTIDCASKRLGSTKEGKKQLLKLILEWVEQYQLHKRRATEMDPSTACLSPSPSPWVPPAPPCESCPNSLAAPFPPTMGGYARDPYSSAAAATVAVPVPVSNQTMNNANLYLVPAEYHQPTDSPQSWSGPYSMPQAQYNPFPDNTKLPVSGSQAQALYANPYPYQVFDGSSGERLVRYGSSATKEARKKRMARQRRISLHQYRHHHTHQNQPQSLVNEQHATRIPAVGDDCTSNSRANPGNWIYWSPAVPPPAPAPMASTMPPLVSSDKPSHRQAPTQPVPSSDRKQSWKTEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELESRDGIPIALEDIGTSNVWNMRYRFWPNNKSRMYLLENTGDFVRVNGLQEGDFIVIYSDTKCGKYLIRGVKVRQPGSKSEAKKPARRNQRNVPQAANNFAFASFKQTVKRTTN*