Information report for CA08g17960
Gene Details
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Functional Annotation
- Refseq: XP_016539677.1 — PREDICTED: B3 domain-containing transcription factor VRN1
- Refseq: XP_016539678.1 — PREDICTED: B3 domain-containing transcription factor VRN1
- Refseq: XP_016539679.1 — PREDICTED: B3 domain-containing transcription factor VRN1
- TrEMBL: A0A2G2Y3R8 — A0A2G2Y3R8_CAPAN; Uncharacterized protein
- STRING: XP_009613233.1 — (Nicotiana tomentosiformis)
- GO:0009909 — Biological Process — regulation of flower development
- GO:0010048 — Biological Process — vernalization response
- GO:0005654 — Cellular Component — nucleoplasm
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Malus domestica: MDP0000555456
- Nicotiana tabacum: XP_016501186.1, XP_016452131.1
- Petunia inflata: Peinf101Scf05020g00053.1, Peinf101Scf08787g00002.1, Peinf101Ctg13510886g00004.1, Peinf101Scf05020g00039.1, Peinf101Scf08787g00001.1
- Populus trichocarpa: Potri.004G230100.1
- Pyrus bretschneideri: Pbr034625.1, Pbr039417.1
- Solanum lycopersicum: Solyc07g054630.2.1, Solyc08g068540.2.1
- Solanum melongena: Sme2.5_07709.1_g00004.1
- Solanum tuberosum: PGSC0003DMP400032011
- Vitis vinifera: GSVIVT01031852001
Sequences
CDS Sequence:
- >CA08g17960|Capsicum_annuum|B3|CA08g17960
ATGTATGTTTGTTATTTCCGTGTGCAGCGCATACCAGACACATTTGTCCAGAAGCATGGAGACGAACTCCTTGATACAGTCAAGCTTATAGTTCCCACTGATGATTTCTGGTGTGTGGGTGTGAAAAAGACTGGTAAAATGTTTTGGCTTCATGATGGTTGGCACGGATTTATGGAACATCATTCTGTGGGCTGTTGGTACTTTTTACTCTTCAAATATGGACAGAACTCATGTTTCAGTGTCCACATATTTGACCTAGCCGCTACTGAGATTGATTATCAATTTAGAAGTCATGGTAACGCTAAATTACGTGATGTTGCTCAGGATCTTTCTCACAGAAAGGATAAAATTGTTGGTGGCAAGAGCTCTGTTGAAATTGTGGATCTATTGGAAACGGAGCAAGGACCAGAGAATTCAGCTAAGTCATCTGAACTTTCCCATGGAGCCAAAAGACGTAAAATGGCATCTGGAAGGATTAAGCATTTGCGTTGCTATGAAACAAGAGGCAAAGCAAATAAATTGTATGATGATGAACAGCTGTTAAATGGGGAGAAATTAAATATATCTGGCATCAGTTTAACTGAGCCACTTGGGGCCAATTTTGTTCGGCAAAGTATGAAAGCTCCTATACATTCTGCAGCGGCAACTAGAGATGCAAGGATATCATTCACTGGTCAGCAAAGGGAGAAATCTGTATTGCATGGAAGCACTGATAATTGTGGCAAAAGAGGACGACCAAGGGCTGCAGAAGCAAACAGGGCAACTAATGCTGCCAAAATGTTTACGCCAGAAAATCCCCACTTCATGACGACTCTTGGAGGTTATAATGTATTAAGGAACCATATTCTGAATATACCAGCTGACTTTGTGCGAGAGCATATGCCAAAGACTTCAGGACTAATTGAACTTCAAGATTCTGATGGAAATAAGTGGAATGTCCGTCGCATCAGGAGGAAAATGCGGATGATTTTAAGCAGAGGATGGTTAGAATTTGTTAGGGATAATAGTTTAGTGGTAGGAGATGCTTGTGTCTTTGAGTTGATCAAGGACCTTCAGGCTCATAAACGTATGCTGAAGGTGCACATATTTCGCTCTAGGGTGGAAGAGAATTCAACAAATTTACGCACTGGCAACATATCTGAACCAACCCGGTCTACTGGTAAAGACTGTACGCTTCAGTTCAATGAAACTAAGCATACAGAGAGTTCAGATCCATTCGAACCAGCATCTTCAGATAGAACCAATCATCAGACCAATACAAAGAGCTCATTCACCGGCCAGCAATGGGAGAAATCGGTGTTGAGTGGAAGCACTAATAATCGTCGCAAAAGAGGACGACCAAGGCTTGCAGAAGCGAACAGGACAAATGATGCCGCCAAAATGTTTATGTCAGAAAATCCTTACTTCATGGTTACTCTTGGAGAATATAACACAGTACGGAACTATATTCTGAATATACCACCTGGATTTGTCCAAGATTATATGCCAAAAACTTCAGAACAAATTAAACTTGAAGATTCTGATGGCAATAAGTGGAATGTACATTGCATTAGGAGGAAAACGTGTATGTTTCTAAGCAAGGGATGGGTAAATTTTGTTAGGGATAATGGTTTAGTGATAGGTGATACTTGTGTCTTTGAGTTGATAAAGGACATTCAGGCTGATGAACTTATGCTGAAAGTGCATATATTCCGCAAGAAGGTGGAACAAAAATAA
Protein Sequence:
- >CA08g17960|Capsicum_annuum|B3|CA08g17960
MYVCYFRVQRIPDTFVQKHGDELLDTVKLIVPTDDFWCVGVKKTGKMFWLHDGWHGFMEHHSVGCWYFLLFKYGQNSCFSVHIFDLAATEIDYQFRSHGNAKLRDVAQDLSHRKDKIVGGKSSVEIVDLLETEQGPENSAKSSELSHGAKRRKMASGRIKHLRCYETRGKANKLYDDEQLLNGEKLNISGISLTEPLGANFVRQSMKAPIHSAAATRDARISFTGQQREKSVLHGSTDNCGKRGRPRAAEANRATNAAKMFTPENPHFMTTLGGYNVLRNHILNIPADFVREHMPKTSGLIELQDSDGNKWNVRRIRRKMRMILSRGWLEFVRDNSLVVGDACVFELIKDLQAHKRMLKVHIFRSRVEENSTNLRTGNISEPTRSTGKDCTLQFNETKHTESSDPFEPASSDRTNHQTNTKSSFTGQQWEKSVLSGSTNNRRKRGRPRLAEANRTNDAAKMFMSENPYFMVTLGEYNTVRNYILNIPPGFVQDYMPKTSEQIKLEDSDGNKWNVHCIRRKTCMFLSKGWVNFVRDNGLVIGDTCVFELIKDIQADELMLKVHIFRKKVEQK*