Gene Details:

  • Gene ID: CA07g02550
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Capsicum annuum
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_016579839.1  — PREDICTED: auxin response factor 1-like isoform X2
  • Swissprot:  Q8L7G0  — ARFA_ARATH; Auxin response factor 1
  • TrEMBL:  A0A2G2WAX2  — A0A2G2WAX2_CAPBA; Auxin response factor 1
  • TrEMBL:  A0A2G2Z062  — A0A2G2Z062_CAPAN; Auxin response factor 1
  • TrEMBL:  A0A2G3BXK7  — A0A2G3BXK7_CAPCH; Auxin response factor 1
  • STRING:  XP_009783661.1  — (Nicotiana sylvestris)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >CA07g02550|Capsicum_annuum|B3|CA07g02550
    ATGGATGCTATAACTGGATCATCACATCAGCAGCAGCAGCAAAACCATGTTTTATTTCAAGGTGACAATCTGTATAGCGAACTATGGAAAGCATGTGCAGGTCCCATGATGGATCTTCCCCGTCCCGGGGAGAGAGTATTCTATTTTCCGATGATGCACGTGGAACTGTTGAAGGAATCAGCTGATCAGATTGTACCATCGTTCCACCTCCCTTCACGTATCCTCTGCAGGGTCATTAACATTCAGCTCAAGGTGGAACCTGAGACTGATGAGGTTTACACACAAATCACTTCGCTCCCAGAAGAAAATCAAAACGACCAAACAATTCCTGATGCTTTGAGTCCCGAGCCTCCTACTTTGCAGTTTCACTCATTCTGCAAGAATTTGACTGCCTCTGATATCAATAGTAACTGGGGACTCACTGTGCGACGAGATGATGCCATCAAATGTTTTCCTCCCCTGGATATCACCAAAGAGAAACCAATCCAGGAGTTAATAGCTACAGACCTTCATGGTTTCGAATGGCAATTTACTCATGTATTTCAAGGCCAACCTCGAAGACATTTGCTTACGAAAGGTTGGGGTAAATTTGTTGCTAGTAAGAGATTAGTTGTTGGGGATTCCGTTATCTTCTTAAGGGGAGAAAATGGTGGACTGCGTGTTGGGATTAGACGCTGTGCTCATCCAAGTCACAACATTGGTTCATCACCAGTTTCGAGTCAAACCGTTGAAGGAGTACTTTCTGTGGTTTCCCATGCTTTTGCAGCTGGAACACTCTTTTCTGTCTATTGTCAGCCACGGTATAACAAACCCGTCACTTCGTCAAGCAGACGTACCTTACTACTACATGCTTGTTCTTATAAATGCCTAATTGTAATATTTCCAGGATGA
Protein Sequence:
  • >CA07g02550|Capsicum_annuum|B3|CA07g02550
    MDAITGSSHQQQQQNHVLFQGDNLYSELWKACAGPMMDLPRPGERVFYFPMMHVELLKESADQIVPSFHLPSRILCRVINIQLKVEPETDEVYTQITSLPEENQNDQTIPDALSPEPPTLQFHSFCKNLTASDINSNWGLTVRRDDAIKCFPPLDITKEKPIQELIATDLHGFEWQFTHVFQGQPRRHLLTKGWGKFVASKRLVVGDSVIFLRGENGGLRVGIRRCAHPSHNIGSSPVSSQTVEGVLSVVSHAFAAGTLFSVYCQPRYNKPVTSSSRRTLLLHACSYKCLIVIFPG*