Information report for CA06g28260
Gene Details
|
|
Functional Annotation
- Refseq: XP_016577483.1 — PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X1
- Refseq: XP_016577484.1 — PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X1
- Refseq: XP_016577485.1 — PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X1
- Swissprot: Q01593 — ABI3_ARATH; B3 domain-containing transcription factor ABI3
- TrEMBL: A0A1U8H283 — A0A1U8H283_CAPAN; B3 domain-containing transcription factor ABI3-like isoform X1
- STRING: PGSC0003DMT400051746 — (Solanum tuberosum)
- GO:0009657 — Biological Process — plastid organization
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0031930 — Biological Process — mitochondria-nucleus signaling pathway
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0001076 — Molecular Function — transcription factor activity, RNA polymerase II transcription factor binding
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Nicotiana benthamiana: Niben101Scf01220g02008.1, Niben101Scf21140g00009.1, Niben101Scf01687g08001.1
- Nicotiana tabacum: XP_016463850.1, XP_016491387.1, XP_016491386.1, XP_016433829.1, XP_016443113.1, XP_016443112.1
- Petunia inflata: Peinf101Scf00191g31018.1
- Sesamum indicum: XP_011080160.1
- Solanum lycopersicum: Solyc06g083590.2.1, Solyc06g083600.1.1
- Solanum melongena: Sme2.5_00827.1_g00006.1
- Solanum tuberosum: PGSC0003DMP400034841, PGSC0003DMP400034979
Sequences
CDS Sequence:
- >CA06g28260|Capsicum_annuum|B3|CA06g28260
ATGAAAAGAGAGTTCAGTGAGCTTTATTATGGTTGTAATAAACAAGATGTGCATGGATTTGAGAATATTAATATGGTGCCATCACTGGATGATGATCATATTCAAAGTCAGCAGCAACATCCTACTGATTTTGATCCTATGGATGATACAGATATTTGGCTCAATGGAAATTTTCCAACTGATTTTACTTCTCTTCAAGATTTTCCATGCATGTCCTCTTCATCCTCAACTTCCAATTCCCTTCCTACGGAATCTGATCCATCTTCATGGGCAGTTCCAAAATGTGATACTGGAAAAGATTTCGACACGAAAATGGACACAATTGGCAACCAAGAATGTGTACATGTGATGGAAAATCTTGGATACATGGATTTAGTAGATGGGGATCATGAATTTCTTGACCCCATCTCTTTCTTCAGTGGTGAAAGTTCACAGGAGAATCAACAACAGAAAGGAGGAGGGGATGATCAAAAGGTATCTATTTTTCAAGGGGATAGTGAGCTAGCACTGATGTTCTTGGAGTGGCTAAAGCAAAACAAAGACTACATTTCTGCTGAAGACATGAGGAGTATTAAGCTCAAACGTTCAACGATTGAAAGCGCTTCGAGGCGATTGGGAAGTACTAAAGAAGGGAAAAAACAGCTGTTGAGGCTCATCCTTGATTGGGTTGAACAGCACAGGTTGCAAAAGAAACAAATGACAGAAGCACAAGCCATTAATCAAATGACCCTTCAGAACACCGCCCATTGTAATATTGATCCAAATACGTGTTTTTATCCTCCTCAATGGATGGCAAATCCGGCTTACAACGCCCCTTTAGCCGAGCCGATGCAAGGGTACATTATTGGTGATCCTTTATTCGCGCCGCCTTTTAATCATACAACGAGTGTAAGTTCAAGTTCACCAGCTTCAACAGAATATCAACCCATGGACACTTGTCAATCCTGGTCTTCGTCTCAATTTACGATGGCGACCGCTTGTCAGTACAATCAGTTTCCTGATAATGATAATACTAATGTTGATGCTACCGATGTAACTGATCAATCTCGAGCATTATTCACTACTCAATATACGTACCAGCTTTTCGATGGGCATGGTGAGAGATTGGCAAGGTTTGGTTCTTGTGCTACTAAAGAGGCTAGGAAGAACAGAATGGCTAGGCAGAGAAGAGTACCGTCGCACCATTTTCGCCATCAGACTCAGAATCAAAGACAGATTAGTAATGAGCAAAGTGTAATGATGGGTGGACAGATTAATAGTTGTGCAATGTCTCAACCTAACAATCCAGGAAATTGGGTATACTGGCCTTCTGCTGCTGCTGCTGCTGCTGCTACACCAATTGTGATGGTTCCACAGGCTGATGCTCCACAATCACTTCCAATGGAGAGGCGAGCTTCACAGAAGCATGGGTCGACAGACAAAAAACAGGCTTGCAGCAGAACAGAGAAGAATCTGAAATTTCTCCTGCAAAAAGTACTGAAGCAAAGTGATGTTGGTAGTCTAGGAAGAATTGTGTTGCCAAAGAAAGAAGCAGAAACTCATCTCCCACAACTTGAATCAAGAGATGGAATTTCCATTGCCATGGAAGACATTGGAACTTCTCGTGTTTGGAACATGAAATATAGGTATTGGCCAAATAACAAAAGCAGGATGTACCTTCTTGAGAACACAGGTGATTTTGTTCTAGCTAATGGACTTCAAGAAGGTGATTTCATCGTAATATACGCTGACATAAAGTGTGGAAAATATTTGATACGAGGAGTAAAAGTGAGGCCGAATGTAGCAAAATCAGACGGCATGCAACCCGCAAAGAAACACGTGCGTAAAACAGCTGCTGTTGCGTCCCCTCCAGTTGCGCAAGCAGTTAGATAG
Protein Sequence:
- >CA06g28260|Capsicum_annuum|B3|CA06g28260
MKREFSELYYGCNKQDVHGFENINMVPSLDDDHIQSQQQHPTDFDPMDDTDIWLNGNFPTDFTSLQDFPCMSSSSSTSNSLPTESDPSSWAVPKCDTGKDFDTKMDTIGNQECVHVMENLGYMDLVDGDHEFLDPISFFSGESSQENQQQKGGGDDQKVSIFQGDSELALMFLEWLKQNKDYISAEDMRSIKLKRSTIESASRRLGSTKEGKKQLLRLILDWVEQHRLQKKQMTEAQAINQMTLQNTAHCNIDPNTCFYPPQWMANPAYNAPLAEPMQGYIIGDPLFAPPFNHTTSVSSSSPASTEYQPMDTCQSWSSSQFTMATACQYNQFPDNDNTNVDATDVTDQSRALFTTQYTYQLFDGHGERLARFGSCATKEARKNRMARQRRVPSHHFRHQTQNQRQISNEQSVMMGGQINSCAMSQPNNPGNWVYWPSAAAAAAATPIVMVPQADAPQSLPMERRASQKHGSTDKKQACSRTEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPQLESRDGISIAMEDIGTSRVWNMKYRYWPNNKSRMYLLENTGDFVLANGLQEGDFIVIYADIKCGKYLIRGVKVRPNVAKSDGMQPAKKHVRKTAAVASPPVAQAVR*