Gene Details:

  • Gene ID: BGIOSGA035909-PA
  • Gene Name: OsI_38948
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Oryza sativa subsp. indica
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_025878095.1  — B3 domain-containing protein Os12g0592300 isoform X1
  • Swissprot:  Q2QMT2  — Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
  • TrEMBL:  A0A0E0GW03  — A0A0E0GW03_ORYNI; Uncharacterized protein
  • TrEMBL:  A0A0E0RJG1  — A0A0E0RJG1_ORYRU; Uncharacterized protein
  • TrEMBL:  A2ZM95  — A2ZM95_ORYSI; Uncharacterized protein
  • STRING:  ORUFI12G19440.1  — (Oryza rufipogon)
  • STRING:  ONIVA03G41700.1  — (Oryza nivara)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0009909  — Biological Process — regulation of flower development
  • GO:0010048  — Biological Process — vernalization response
  • GO:0005654  — Cellular Component — nucleoplasm
  • GO:0003677  — Molecular Function — DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >BGIOSGA035909-PA|Oryza_sativa_subsp._indica|B3|BGIOSGA035909-PA
    ATGGGTGAGAAGGGGTGTGAGAGTTGCAGAGAGTGGCAGGAGCACTGCTACAGGGAGCACATGGATGTGAGCAGGATTCGCTTCTTCAGGCTCATGACTGGAGATTTTGCTCATGGCATTAGCATACCGGAGAAAGTTGCGGACAGATTCAGTGGTCAGATCACCAAAGGGTTCAACCTGAAAGCACCCAGTGGCGAAACATGGCGTGTCAGCGTCGAAAAGGTTGCTGATGAGCTGATCCTCATGTCAGGATGGGAGGATTTTGCCAAGGCTCATGAATTGCAGGAGAATGACCTCCTGTTCTTCACTTGCAATGGCCGTTGCAATGGCAGCTTCTCCTTTGATGTACTAATCTTTGATGCAAGTGGCTGTGAGAAAGTGTCTTGCTTCTTTATTGGTAAAAAGAACAGTATAGGTGGTCAGACTCAGAATGCTGAGCAATACCATTTAAGTGATTCTGAAGATACTAGCACACCATCAACATTTCTAGTTGGATCTCCTCACAAGGCCTCTACTTCAAAGAAATTGAATGGCAAAACCAAGACTAATCCAAATAAAGATGATCCATTTTCAACAGGGAAGGAGCCTGAAGATCCAAACAGCAGCCGCTCTCATGTCAAACATGAGATGATTGAGGAAGAGAAGAGTGATGATGATGATGAGCATGCTGATTATGAACATGCTGACTACTACTACTCGAGGTTTGCCAATTACCTAACTGGCGAGGAACGTGAAGAGATATTCAGTTTGGTGTCACTGCAACCAGGCAATCCTGTATTTGTGACTGTTCTGCAGGCGCCACAAATTCATCGCAAGGGCCTCCTGATCGTCCCCAGTGGATTTGCAGCTGATCATCTTGACAGCAGATCACAAGAAATCCTGCTGATGAGACCAAACAAAAAGGAGAAATGGTATGTCAAATACTACCATGCAAGCACTACCAGGGGCTTCAATTGCCAACGCTGGATCAAGTTCATCCGCGAGAACAGGCTGCGAGAAGGGTACATCTGCATCTTCGAGCTGATGAAAGGCGCAAGGCGAGTGACCATGACAGTTCATGTCATTGGGAAGGTTGATGACCGGTTTGTTCTACTGGGCTAA
Protein Sequence:
  • >BGIOSGA035909-PA|Oryza_sativa_subsp._indica|B3|BGIOSGA035909-PA
    MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNSIGGQTQNAEQYHLSDSEDTSTPSTFLVGSPHKASTSKKLNGKTKTNPNKDDPFSTGKEPEDPNSSRSHVKHEMIEEEKSDDDDEHADYEHADYYYSRFANYLTGEEREEIFSLVSLQPGNPVFVTVLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRWIKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVDDRFVLLG