Gene Details:

Protein Features:

Annotation Proteins:

  • Refseq:  XP_023900597.1  — B3 domain-containing protein Os07g0563300-like isoform X2
  • Swissprot:  Q0D5G4  — Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
  • TrEMBL:  A0A2I4E8I7  — A0A2I4E8I7_JUGRE; B3 domain-containing protein Os07g0563300-like isoform X2
  • STRING:  XP_008224939.1  — (Prunus mume)

Gene Ontology:

  • GO:0003677  — Molecular Function — DNA binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1|Castanea_mollissima|B3|augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1
Protein Sequence:
  • >augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1|Castanea_mollissima|B3|augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1
    MVNLPLQQVHCGCIVSSHAFTLLDPGGIECMTCVRKNLPWTSNPAWPPPLCFHPPLQERLKDLSVKNWNQLAGSGPVPWRQAPSLFNSSIPASEQSRFPYDYDISGGINKLNANDRLSASPLEKKKIEDLSERLMNGNLKLGAREILDNGNAGIKSEENHSSCLSQQSSSLKEDPSTPQFGLTAPHASPNETNAQIGVRNGRPRVDARGRSLLLPRYWPRFTDQELQQISGDSNSVITPLFEKMLSHSDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDIVTFSRLEPEGKLVMGFRKASNAPPSDQDHDSNKTMNGVSTHGDAELADPSSWSKVDKSGYIAKEVLGAKSSISRKKKNSTLRAKSKRVRIENEDLIQLKITWEEAQVLLRPSPNHLPSVVVIEGFEFEEYEDAPILGKPTIFAANNLGCELILKFKHAQCVSIFGTWTDYPCLFPTLRSIYVSEKIQWVQCEDCFKWRKLPANALLPSKWTCTENSWDPERSVCSAAQELTPEQLEDLLPHCNLDNVEALEGLDTLANLAILGEGETLPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCQTVKRRFRTLMMRREKKQSEKEAETIRKKQHQQQPRQLPVPEKLQDDDSLLYNNTGNSSPKQIREINEVSDDEPNKMKSSSSPFKGQIDLNIQPEREEELSPGSDSGSMMKLLQDATERYLKQQRLSSSGGNSSANQSHPSGDVAGGEKLTNIINLGSNHSDADEDHPVTLSIKASASTPTAG